Description
The dataset represents the Supplementary material for the article devoted to the new finds of macrofungi in regions of Russian Far East, published in Rebriev et al., 2024. A total of 53 species of macromycetes are reported for the first time from 6 administrative units of the Russian Far East: Amur, Jewish Autonomous, Magadan, and Sakhalin Oblast, Khabarovsk and Primorskiy Krai. 11 species are reported as the first records for the Russian Far East. For some of the rare species, notes are given about the main differences in morphology and ecology, about the features of distribution. The identification of Pluteus hibbettii and Rhizopogon laricinus was confirmed by molecular genetic methods. The material was deposited in ABGI, LE, MAG, SVER, TOB, VLA herbaria as well as in the Yu. Rebriev (YuR) and A. Shiryaev (Shiryaev) personal collections.
Data Records
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 77 records.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versions
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
Rebriev Y, Bogacheva A, Bochkareva I, Bukharova N, Erofeeva E, Kapitonov V, Kochunova N, Malysheva E, Sazanova N, Shiryaev A, Zvyagina E (2024). New species of macromycetes for regions of the Russian Far East - 2024. Version 1.1. Federal Research Centre The Southern Scientific Centre of The Russian Academy of Sciences. Occurrence dataset. http://ipt.ugrasu.ru:8080/resource?r=rebriev5&v=1.1
Rights
Researchers should respect the following rights statement:
The publisher and rights holder of this work is Federal Research Centre The Southern Scientific Centre of The Russian Academy of Sciences. This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF Registration
This resource has been registered with GBIF, and assigned the following GBIF UUID: 49ccddcf-c5e0-410e-98c8-1f3b5da878d7. Federal Research Centre The Southern Scientific Centre of The Russian Academy of Sciences publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Participant Node Managers Committee.
Keywords
ascomycetes; basidiomycetes; biodiversity; fungal distribution; morphological and molecular genetic identification; rare species; Russia; Occurrence
Contacts
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https://orcid.org/0000-0001-5156-8593
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Geographic Coverage
Six regions of Russian Far East: Amur Oblast, Jewish Autonomous Oblast, Khabarovsk Krai, Magadan Oblast, Primorskiy Krai, Sakhalin Oblast
| Bounding Coordinates | South West [43.112, 127.293], North East [63.905, 154.426] |
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Temporal Coverage
| Start Date / End Date | 1958-08-09 / 2023-11-04 |
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Project Data
No Description available
| Title | New species of macromycetes for the regions of the Russian Far East |
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Sampling Methods
Specimens were collected and preserved using standard mycological methods (Bondartsev, Singer, 1950)
| Study Extent | Information is given on 53 species of macromycetes (Ascomycota, Basidiomycota), first documented in the Russian Far East (11 species) or in its administrative regions (Amur, Jewish Autonomous, Magadan, and Sakhalin Oblast, Khabarovsk and Primorskiy Krai). |
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| Quality Control | The specimens examined are deposited in ABGI (Blagoveshchensk), LE-F (Saint Petersburg), MAG (Magadan), SVER (Ekaterinburg), TOB (Tobolsk) and VLA (Vladivostok) herbaria. The novelty of the listed species for the Russian Far East was checked against existing literature, including the checklists of Bolshakov et al. (2021, 2022) and the electronic resource of the Global Biodiversity Information Facility (GBIF). |
Method step description:
- The identification was carried out mainly by morphological methods. The identification of Pluteus hibbettii and Rhizopogon laricinus was confirmed by molecular genetic methods. Preparation for molecular analyses of the strains was performed by sampling a small piece of mycelium from the advancing zone of the colonies using Thermo Scientific Phire Plant Direct PCR Kit. For DNA extraction from voucher, small fragments of dried basidiomata were used. The procedure of DNA extraction completely corresponded to the manufacturer’s protocol of the Phytosorb Kit (ZAO Syntol, Russia). The procedures of amplification and sequencing of ITS fragment were performed with a standard pair of primers ITS1f-ITS4b (White et al., 1990; Gardes, Bruns, 1993). Sanger sequencing was carried out at the Center for collective use of scientific equipment “Cellular and molecular technology of studying plants and fungi” (Komarov Botanical Institute of the Russian Academy of Sciences, St. Petersburg) and the Youth Molecular Genetic Laboratory of Yugra State University.
Collection Data
| Collection Name | ABGI |
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| Collection Name | MAG |
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| Collection Name | SVER |
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| Collection Name | TOB |
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| Collection Name | VLA |
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| Collection Name | LE F |
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| Specimen preservation methods | Dried |
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Bibliographic Citations
- Bondartsev, A.S.; Singer, R.A. (1950). [A guide to the scientific study of higher Basidiomycetes according to collections]. Acta Inst. Bot. Acad. Sci. URSS (Pl. Crypt.) Ser. 2 1950 (6): 499-543, 50 figs.
- Rebriev Yu.A., Shiryaev A.G., Kochunova N.A., Sazanova N.A., Erofeeva E.A., Bukharova N.V., Kapitonov V.I., Bogacheva A.V., Bochkareva I.V., Zvyagina E.A., Malysheva E.F.New species of macromycetes for regions of the Russian Far East. 5 // Mikologiya i fitopatologiya. 2024. V. 58 (5). P. 381-390
- Gardes M., Bruns T.D. (1993) ITS primers with enhanced specificity for basidiomycetes application to the identification of mycorrhizae and rusts. Mol. Ecol. 1993. V. 2. P. 132–118. doi:10.1111/j.1365-294x.1993.tb00005.x
- White T.J., Bruns T., Lee S. et al. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (eds.). PCR Protocols: a guide to methods and applications. Academic Press, N. Y., P. 315–322.
Additional Metadata
| Purpose | Despite the collective research efforts, a large proportion of the vast Russian Far Eastern territories still remains insufficiently or poorly known. The mycobiota of a number of nature reserves has not been fully studied. The considerable amount of material accumulated in the major herbaria collections has not been analysed and published. Due to the critical analysis of many groups of basidiomycetes with an advent of molecular methods, accumulated herbaria collections have to be sufficiently revised. This publication introduces the findings of macromycetes that are new for individual administrative divisions of the Far East or for the entire region altogether. |
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| Alternative Identifiers | 49ccddcf-c5e0-410e-98c8-1f3b5da878d7 |
| http://ipt.ugrasu.ru:8080/resource?r=rebriev5 |