Описание
The dataset share information for 13 specimens examined during the description of the new Suillus species from North Asia.The specimens of the Suillus bresadolae f. flavogriseus (Cazzoli & Consiglio) Klofac, Suillus nueschii var. caerulescens Singer, Suillus gastroflavus Zvyagina, Rebriev, Sazanova & E.F. Malysheva and new species are annotated. Annotations are accompanied by geographic data, images of original labels, fruiting bodies, exsicсates and microstructures.
Записи данных
Данные этого occurrence ресурса были опубликованы в виде Darwin Core Archive (DwC-A), который является стандартным форматом для обмена данными о биоразнообразии в виде набора из одной или нескольких таблиц. Основная таблица данных содержит 13 записей.
Данный экземпляр IPT архивирует данные и таким образом служит хранилищем данных. Данные и метаданные ресурсов доступны для скачивания в разделе Загрузки. В таблице версий перечислены другие версии ресурса, которые были доступны публично, что позволяет отслеживать изменения, внесенные в ресурс с течением времени.
Версии
В таблице ниже указаны только опубликованные версии ресурса, которые доступны для свободного скачивания.
Как оформить ссылку
Исследователи должны дать ссылку на эту работу следующим образом:
Zvyagina E, Sazanova N (2024). New Larix-associated Suillus species (Boletales, Agaricomycetes) from North Asia. Version 1.5. Yugra State University Biological Collection (YSU BC). Occurrence dataset. http://ipt.ugrasu.ru:8080/resource?r=kovalenkoi&v=1.5
Права
Исследователи должны соблюдать следующие права:
Публикующей организацией и владельцем прав на данную работу является Yugra State University Biological Collection (YSU BC). Эта работа находится под лицензией Creative Commons Attribution Non Commercial (CC-BY-NC 4.0).
Регистрация в GBIF
Этот ресурс был зарегистрирован в GBIF, ему был присвоен следующий UUID: 5e2d1104-a25f-40ab-8a99-d8426a27b65e. Yugra State University Biological Collection (YSU BC) отвечает за публикацию этого ресурса, и зарегистрирован в GBIF как издатель данных при оподдержке Participant Node Managers Committee.
Ключевые слова
Occurrence; Specimen
Контакты
- Metadata Provider ●
- Originator ●
- Point Of Contact
http://orcid.org/0000-0003-2063-4847
- Metadata Provider ●
- Originator
- Curator
Географический охват
Specimens originated from Italia (Suillus bresadolae f. flavogriseus (Cazzoli & Consiglio) Klofac MCVE18244 Ex Herb Simonini N1844) and Russian Federation from Altay Mountains (Suillus nueschii var. caerulescens Singer LE4547, LE4554), Irkutsk Region (Suillus sp. LE18056, LE18089, LE18421, LE4766) and Magadan Region (Suillus sp. MAG5111, MAG2642, MAG1307, MAG1308, Suillus gastroflavus Zvyagina, Rebriev, Sazanova & E.F. Malysheva Holotype MAG3480 and Paratype MAG5122/LE312702)
| Ограничивающие координаты | Юг Запад [43,069, -177,188], Север Восток [73,628, 1,406] |
|---|
Таксономический охват
13 specimens, 5 species, 1 variety, 1 form
| Species | Suillus gastroflavus, Ixocomus flavus |
|---|---|
| Variety | Suillus nueschii var. caerulescens |
| Form | Suillus bresadolae f. flavogriseus |
Временной охват
| Дата начала / Дата окончания | 1937-08-05 / 2018-08-21 |
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Данные проекта
The new laboratory of molecular methods for biodiversity research and monitoring was organized thanks to the support of the Russian Ministry of Sience and Education grant for organization of New Young Researcher Laboratories as part of the implementation of the national project Science and Universities.
| Название | Laboratory for the development of a metagenomic analysis methodology for express assessment of environmental impacts in conditions of intensive subsoil use on the basis of Yugra State University |
|---|---|
| Финансирование | Russian Ministry of Sience and Education grant for organization of New Young Researcher Laboratories as part of the implementation of the national project Science and Universities |
| Описание плана выполнения исследований | Our goal is to develop molecular methods of biodiversity inventory with the aim of environmental impact assessment in the region of intence oil and gas management. With special love for fungi and raised bogs, we intend to initiate the molecular approach to study these important and vulnеrable communities |
Исполнители проекта:
Методы сбора
Collections were made, documented and preserved using the standard methods (Bondartsev, Zinger, 1955, Tulloss, 1999, Halling, 1996)
| Охват исследования | The dataset contains annotations of specimens used for comparative and phylogenetic study, as well as their images and links to DNA sequences in the GenBank |
|---|---|
| Контроль качества | All determinations could be checked online or by the request of specimens from the LE and MAG. DNA sequences are deposited in Genbank. |
Описание этапа методики:
- Specimens were photographed in situ, examined for taste and smell, dried at temperatures below 50°C.
- Macroscopic descriptions were based on the study of both fresh and dried materials as well as on photographs.
- Microstructures were observed at ×400 and ×1000 in squash preparations in 5% KOH, Congo Red, and Melzer’s reagent. Up to 30 basidiospores, 10 hymenial cystidia, and 10 terminal elements of the pileipellis per specimen were measured to obtain descriptive statistics.
- Measurements were made in ADFImageCapture calibrated by OMP object-micrometre (LOMO). Dimensions are given as (absolute min) average min–average max (absolute max) of the all examined specimens, Q = average min–average max quotient (length/width ratio).
- PCR ITS products were obtained without DNA extraction using the standard protocol of Thermo Scientific Phire Tissue Direct PCR Master Mix kit.
- For amplification of the ITS region the primers ITS1-F, ITS4-B (Gardes, Bruns, 1993) were used.
- LSU (28S) was amplified with LR0R, LR5 (Vilgalys, Hester, 1990) pair of primers, TEF1 with EF1-983F and EF1-1567R (Rehner, Buckley, 2005).
- Amplified products were sequenced using BigDyeH Terminator 3.1 Cycle Sequencing Kit (Applied Biosystems, Foster City, California).
- The sequences were assembled in CodonCode Aligner V.9.0.1 (CodonCode Corporation).
Данные коллекции
| Название коллекции | Komarov Botanical Institute of RAS |
|---|---|
| Идентификатор коллекции | LE |
| Название коллекции | Institute of the Biological Problems of the North, Far-Eastern Branch of the Russian Academy of Sciences |
|---|---|
| Идентификатор коллекции | MAG |
| Название коллекции | Museo di Storia Naturale di Venezia |
|---|---|
| Идентификатор коллекции | MCVE |
| Методы сохранения образцов | Dried |
|---|
Библиографические ссылки
- Gardes, M., Bruns, T.D. (1993) ITS primers with enhanced specifity for Basidiomycetes: application to identification of mycorrhizae and rusts. Mol. Ecol. 2: 113–118.
- Vilgalys, R., Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4239–4246.
- Rehner, S.A., Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: Evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. http://dx.doi.org/10.3852/mycologia.97.1.84
- Halling, R. E. (1996) Recommendations for collecting mushrooms for scientific study. Pp. 135-141. In: Alexiades, M. N. and J. W. Sheldon (eds.), Selected Guidelines for Ethnobotanical Research: A Field Manual. The New York Botanical Garden Press, Bronx.
- Tulloss, R. (1999) Trial Year Notebook for the Great Smoky Mountains National Park All Taxa Biodiversity Inventory. Epigeous Macromycetes. 75 p.
- Bondartsev, A.S., Singer R.A. (1950) Guidelines for the collection of higher basidial fungi for their scientific study // Proceedings of the Komarov Botanical Institute Academy of Sciences of the USSR. V 2. ( 6). P. 499–572.
Дополнительные метаданные
| Альтернативные идентификаторы | 5e2d1104-a25f-40ab-8a99-d8426a27b65e |
|---|---|
| http://ipt.ugrasu.ru:8080/resource?r=kovalenkoi |