New Larix-associated Suillus species (Boletales, Agaricomycetes) from North Asia

Occurrence
Dernière version Publié par Yugra State University Biological Collection (YSU BC) le déc. 15, 2024 Yugra State University Biological Collection (YSU BC)
Date de publication:
15 décembre 2024
Licence:
CC-BY-NC 4.0

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Description

The dataset share information for 13 specimens examined during the description of the new Suillus species from North Asia.The specimens of the Suillus bresadolae f. flavogriseus (Cazzoli & Consiglio) Klofac, Suillus nueschii var. caerulescens Singer, Suillus gastroflavus Zvyagina, Rebriev, Sazanova & E.F. Malysheva and new species are annotated. Annotations are accompanied by geographic data, images of original labels, fruiting bodies, exsicсates and microstructures.

Enregistrements de données

Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 13 enregistrements.

Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.

Versions

Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.

Comment citer

Les chercheurs doivent citer cette ressource comme suit:

Zvyagina E, Sazanova N (2024). New Larix-associated Suillus species (Boletales, Agaricomycetes) from North Asia. Version 1.5. Yugra State University Biological Collection (YSU BC). Occurrence dataset. http://ipt.ugrasu.ru:8080/resource?r=kovalenkoi&v=1.5

Droits

Les chercheurs doivent respecter la déclaration de droits suivante:

L’éditeur et détenteur des droits de cette ressource est Yugra State University Biological Collection (YSU BC). Ce travail est sous licence Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0.

Enregistrement GBIF

Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 5e2d1104-a25f-40ab-8a99-d8426a27b65e.  Yugra State University Biological Collection (YSU BC) publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du Participant Node Managers Committee.

Mots-clé

Occurrence; Specimen

Contacts

Elena Zvyagina
  • Fournisseur Des Métadonnées ●
  • Créateur ●
  • Personne De Contact
researcher
Yugra State University
Chekhova street, 16
628012 Khanty-Mansiysk
Khanty-Mansi Autonomous Okrug-Yugra
RU
http://orcid.org/0000-0003-2063-4847
Nina Sazanova
  • Fournisseur Des Métadonnées ●
  • Créateur
Herbarium curator of fungi
Institute of Biological Problems of the North of the Far East Branch of the Russian Academy of Sciences
Portovaja Street, 18
685000 Magadan
Magadan Region
http://orcid.org/0000-0002-0788-1942
Nina Filippova
  • Conservateur
senior researcher
Yugra State University
Stroiteley street, 2
628508 Khanty-Mansiysk
Khanty-Mansi Autonomous Okrug-Yugra
RU
https://fungariumysu.org/
http://orcid.org/0000-0002-9506-0991

Couverture géographique

Specimens originated from Italia (Suillus bresadolae f. flavogriseus (Cazzoli & Consiglio) Klofac MCVE18244 Ex Herb Simonini N1844) and Russian Federation from Altay Mountains (Suillus nueschii var. caerulescens Singer LE4547, LE4554), Irkutsk Region (Suillus sp. LE18056, LE18089, LE18421, LE4766) and Magadan Region (Suillus sp. MAG5111, MAG2642, MAG1307, MAG1308, Suillus gastroflavus Zvyagina, Rebriev, Sazanova & E.F. Malysheva Holotype MAG3480 and Paratype MAG5122/LE312702)

Enveloppe géographique Sud Ouest [43,069, -177,188], Nord Est [73,628, 1,406]

Couverture taxonomique

13 specimens, 5 species, 1 variety, 1 form

Species Suillus gastroflavus, Ixocomus flavus
Variety Suillus nueschii var. caerulescens
Form Suillus bresadolae f. flavogriseus

Couverture temporelle

Date de début / Date de fin 1937-08-05 / 2018-08-21

Données sur le projet

The new laboratory of molecular methods for biodiversity research and monitoring was organized thanks to the support of the Russian Ministry of Sience and Education grant for organization of New Young Researcher Laboratories as part of the implementation of the national project Science and Universities.

Titre Laboratory for the development of a metagenomic analysis methodology for express assessment of environmental impacts in conditions of intensive subsoil use on the basis of Yugra State University
Financement Russian Ministry of Sience and Education grant for organization of New Young Researcher Laboratories as part of the implementation of the national project Science and Universities
Description du design Our goal is to develop molecular methods of biodiversity inventory with the aim of environmental impact assessment in the region of intence oil and gas management. With special love for fungi and raised bogs, we intend to initiate the molecular approach to study these important and vulnеrable communities

Les personnes impliquées dans le projet:

Nina Filippova
  • Conservateur
http://orcid.org/0000-0002-9506-0991

Méthodes d'échantillonnage

Collections were made, documented and preserved using the standard methods (Bondartsev, Zinger, 1955, Tulloss, 1999, Halling, 1996)

Etendue de l'étude The dataset contains annotations of specimens used for comparative and phylogenetic study, as well as their images and links to DNA sequences in the GenBank
Contrôle qualité All determinations could be checked online or by the request of specimens from the LE and MAG. DNA sequences are deposited in Genbank.

Description des étapes de la méthode:

  1. Specimens were photographed in situ, examined for taste and smell, dried at temperatures below 50°C.
  2. Macroscopic descriptions were based on the study of both fresh and dried materials as well as on photographs.
  3. Microstructures were observed at ×400 and ×1000 in squash preparations in 5% KOH, Congo Red, and Melzer’s reagent. Up to 30 basidiospores, 10 hymenial cystidia, and 10 terminal elements of the pileipellis per specimen were measured to obtain descriptive statistics.
  4. Measurements were made in ADFImageCapture calibrated by OMP object-micrometre (LOMO). Dimensions are given as (absolute min) average min–average max (absolute max) of the all examined specimens, Q = average min–average max quotient (length/width ratio).
  5. PCR ITS products were obtained without DNA extraction using the standard protocol of Thermo Scientific Phire Tissue Direct PCR Master Mix kit.
  6. For amplification of the ITS region the primers ITS1-F, ITS4-B (Gardes, Bruns, 1993) were used.
  7. LSU (28S) was amplified with LR0R, LR5 (Vilgalys, Hester, 1990) pair of primers, TEF1 with EF1-983F and EF1-1567R (Rehner, Buckley, 2005).
  8. Amplified products were sequenced using BigDyeH Terminator 3.1 Cycle Sequencing Kit (Applied Biosystems, Foster City, California).
  9. The sequences were assembled in CodonCode Aligner V.9.0.1 (CodonCode Corporation).

Données de collection

Nom de la collection Komarov Botanical Institute of RAS
Identifiant de collection LE
Nom de la collection Institute of the Biological Problems of the North, Far-Eastern Branch of the Russian Academy of Sciences
Identifiant de collection MAG
Nom de la collection Museo di Storia Naturale di Venezia
Identifiant de collection MCVE
Méthode de conservation des spécimens Dried

Citations bibliographiques

  1. Gardes, M., Bruns, T.D. (1993) ITS primers with enhanced specifity for Basidiomycetes: application to identification of mycorrhizae and rusts. Mol. Ecol. 2: 113–118.
  2. Vilgalys, R., Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4239–4246.
  3. Rehner, S.A., Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: Evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. http://dx.doi.org/10.3852/mycologia.97.1.84
  4. Halling, R. E. (1996) Recommendations for collecting mushrooms for scientific study. Pp. 135-141. In: Alexiades, M. N. and J. W. Sheldon (eds.), Selected Guidelines for Ethnobotanical Research: A Field Manual. The New York Botanical Garden Press, Bronx.
  5. Tulloss, R. (1999) Trial Year Notebook for the Great Smoky Mountains National Park All Taxa Biodiversity Inventory. Epigeous Macromycetes. 75 p.
  6. Bondartsev, A.S., Singer R.A. (1950) Guidelines for the collection of higher basidial fungi for their scientific study // Proceedings of the Komarov Botanical Institute Academy of Sciences of the USSR. V 2. ( 6). P. 499–572.

Métadonnées additionnelles

Identifiants alternatifs 5e2d1104-a25f-40ab-8a99-d8426a27b65e
http://ipt.ugrasu.ru:8080/resource?r=kovalenkoi