Description
Elena Zvyagina's personal collection of fungi collected as a result of field research in various regions of Russia. At the moment, the dataset is loaded mainly with specimens collected in North Karelia, Western Siberia, and the Russian Far East. The collection dataset also includes parts of specimens loaned by various herbaria and personal collections in the course of work on Boletaceae, even if these specimens were returned to the herbarium. The classical method of collection and preservation of dry specimens of macrofungi is used to store the material. A large part of collection has been sequenced and has attached sequence material. The collection is stored at the White Sea Biological Station of Moscow State University (186672, Russia, Republic of Karelia, poselok Primorsky).
Data Records
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 2,161 records.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versions
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
Zvyagina E (2025). The Fungarium of Elena Zvyagina. Version 1.102. Yugra State University Biological Collection (YSU BC). Occurrence dataset. http://ipt.ugrasu.ru:8080/resource?r=ez-f&v=1.102
Rights
Researchers should respect the following rights statement:
The publisher and rights holder of this work is Yugra State University Biological Collection (YSU BC). This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF Registration
This resource has been registered with GBIF, and assigned the following GBIF UUID: ff67eb9c-8d71-4b15-819d-d82a4e65cafc. Yugra State University Biological Collection (YSU BC) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Participant Node Managers Committee.
Keywords
Occurrence; Occurrence
Contacts
- Metadata Provider ●
- Originator ●
- Point Of Contact
https://orcid.org/0000-0003-2063-4847
Geographic Coverage
The geography of the collection covers mainly Northern West Siberia and other regions sampled during the field work in several regions of Russia.
| Bounding Coordinates | South West [46.559, -169.453], North East [71.301, -168.047] |
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Taxonomic Coverage
No Description available
| Kingdom | fungi |
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Temporal Coverage
| Start Date / End Date | 1941-01-01 / 2023-01-01 |
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Project Data
The new laboratory of molecular methods for biodiversity research and monitoring was organized thanks to the support of the Russian Ministry of Sience and Education grant for organization of New Young Researcher Laboratories as part of the implementation of the national project Science and Universities.
| Title | Laboratory for the development of a metagenomic analysis methodology for express assessment of environmental impacts in conditions of intensive subsoil use on the basis of Yugra State University |
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| Funding | Russian Ministry of Sience and Education grant for organization of New Young Researcher Laboratories as part of the implementation of the national project Science and Universities |
| Study Area Description | Our goal is to develop molecular methods of biodiversity inventory with the aim of environmental impact assessment in the region of intence oil and gas management. With special love for fungi and raised bogs, we intend to initiate the molecular approach to study these important and vulnеrable communities |
The personnel involved in the project:
Sampling Methods
Specimens were photographed in situ for macromorphological features. Fading out features like smell and taste were described in field. Sporocarps were dried in the mushroom dryer under 40-50 °C. Dried specimens are stored in Ziplocs and paper envelopes.
| Study Extent | Collections were made mostly in boreal zone of Eurasia during the study of fungal diversity of taiga forests, subpolar mountains ecosystems and taxonomy of Boletales order. |
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| Quality Control | Most of the specimens are providet with photografs. DNA sequences uploaded to GenBank. Specimens are available by the personal request |
Method step description:
- Forays were undertaken randomly
- Specimens were photographed in situ for macromorphological features
- Fading out features like smell and taste were described in field
- Sporocarps were extracted from substrate and putted into aluminum foil
- Sporocarps were dried in the mushroom dryer under 40-50 °C
- Dried specimens are stored in Ziplocs and paper envelopes
- For amplification of the ITS region the primers ITS1-F, ITS4-B (Gardes, Bruns, 1993) were used
- LSU (28S) was amplified with LR0R, LR5 (Vilgalys, Hester, 1990) pair of primers, TEF1 with EF1-983F and EF1-1567R (Rehner, Buckley, 2005)
- Amplified products were sequenced using BigDyeH Terminator 3.1 Cycle Sequencing Kit (Applied Biosystems, Foster City, California). 10) The sequences were assembled in CodonCode Aligner V.9.0.1 (CodonCode Corporation)
Collection Data
| Collection Name | Komarov Botanical Institute of RAS |
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| Collection Identifier | LE |
| Collection Name | Institute of the Biological Problems of the North, Far-Eastern Branch of the Russian Academy of Sciences |
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| Collection Identifier | MAG |
| Specimen preservation methods | Dried |
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Bibliographic Citations
- Gardes, M., Bruns, T.D. (1993) ITS primers with enhanced specifity for Basidiomycetes: application to identification of mycorrhizae and rusts. Mol. Ecol. 2: 113–118.
- Vilgalys, R., Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4239–4246.
- Rehner, S.A., Buckley, E. (2005) A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: Evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98.
Additional Metadata
| Alternative Identifiers | ff67eb9c-8d71-4b15-819d-d82a4e65cafc |
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| http://ipt.ugrasu.ru:8080/resource?r=ez-f |