說明
The Fungarium of Yugra State University is a systematic reference collection of fungi organized as a part of the Yugra State University Biological Collection (YSU BC). The main purpose of the Fungarium is to initiate and facilitate systematic studies of fungi in the region. It also serves for education and can be used by specialists in different applied disciplines.
The taxonomical structure of the collections currently includes the total number of species represented – about 1.5K, genera represented – about 500, families represented – about 150. The majority of the specimens in the YSU Fungarium belong to the Basidiomycota (about 80%), less to Ascomycota (10%) with few specimens of Zygomycota and Myxomycota. The majority of specimens were collected in Khanty-Mansi Autonomous Okrug (90%), with 11 other regions of Russia represented by small numbers.
The collection is gradually growing and is open to prospective users in systematics, ecology and geography as well as applied disciplines of mycology.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 9,953 筆紀錄。
亦存在 1 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Filippova N, Zvyagina E, Bulyonkova T, Rudykina E (2024). The Fungarium of Yugra State University. Version 1.137. Yugra State University Biological Collection (YSU BC). Occurrence dataset. http://ipt.ugrasu.ru:8080/resource?r=fungariumysu&v=1.137
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 Yugra State University Biological Collection (YSU BC)。 This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: d922b606-6c94-4d51-9277-36c9b03872a7。 Yugra State University Biological Collection (YSU BC) 發佈此資源，並經由Participant Node Managers Committee同意向GBIF註冊成為資料發佈者。
關鍵字
Occurrence; Occurrence
外部資料
此資源尚有其他格式可用
| Northern West Siberia collections portal | http://bioportal.ugrasu.ru/ UTF-8 Specify Web Portal |
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聯絡資訊
- 元數據提供者 ●
- 出處 ●
- 連絡人
- 出處
https://orcid.org/0000-0003-2063-4847
- 出處
- 出處
地理涵蓋範圍
Specimens deposited in the YSU Fungarium were collected mainly in the taiga zone of Western Siberia (Russia). The majority of specimens were collected in Khanty-Mansi Autonomous Okrug-Yugra (94%), 150 specimens from Tomskaya oblast, and several dozens of specimens from Irkutskaya, Moskovskaya, Murmanskaya oblast and from Altay, while the rest four regions represented by a few specimens (Krasnoyarskiy Kray, Novosibirskaya Oblast’, Respublica Buryatia, Tyumenskaya Oblast’). Within administrative borders of Yugra, 6 districts are represented with majority (98%) from Khanty-Mansiyskiy district. The two main sampling areas are located in the vicinities of Khanty-Mansiysk (60N 68E) and the nearby Shapsha and Mukhrino field stations of the YSU. Major vegetation types covered by the collection are coniferous dark taiga forests and their deciduous derivates (more than half of the collection), and ombrotrophic raised bogs (comprising about 30% of the collection). Coniferous forests (dominated by Pinus sibirica, Picea obovata, and Abies sibirica) and their deciduous successions (Populus tremula, Betula pubescens) are characteristic for the taiga zone of Western Siberia. The region is highly bogged, with ombrotrophic peatlands covering about 50% of the area. Other major landscapes include floodplains of big rivers, where meadow and floodplain shrub vegetation develops.
| 界定座標範圍 | 緯度南界 經度西界 [52.909, 22.148], 緯度北界 經度東界 [71.074, 172.969] |
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分類群涵蓋範圍
The taxonomical structure of the collections currently includes the total number of species represented – about 1.5K, genera represented – about 500, families represented – about 150. The majority of the specimens in the YSU Fungarium belong to the Basidiomycota (about 80%), less to Ascomycota (10%) with few specimens of Zygomycota and Myxomycota. The majority of specimens were collected in Khanty-Mansi Autonomous Okrug (90%), with 11 other regions of Russia represented by small numbers.
| Kingdom | Fungi, Mycetozoa |
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時間涵蓋範圍
| 起始日期 / 結束日期 | 2010-01-01 / 2024-01-01 |
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計畫資料
https://fungariumysu.org/moleculab/
| 計畫名稱 | Molecular methods in the study and assessment of biodiversity in the Northern regions |
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| 辨識碼 | FENG-2024-0003 |
| 經費來源 | [RU] Субсидия из федерального бюджета на выполнение государственного задания "Молекулярно-генетические методы в изучении и оценке состояния биоразнообразия Северных регионов (FENG-2024-0003)" №1023041300017-6-1.6.4 от 13.03.2024 [EN] Grant from the federal budget for the implementation of the state assignment "Molecular-genetic methods in the study and assessment of biodiversity in the Northern regions (FENG-2024-0003)" No. 1023041300017-6-1.6.4 dated 13.03.2024. |
參與計畫的人員:
- 連絡人
取樣方法
Specimens in the collection are accumulated by direct observation and extraction of fruiting structures of fungi. The two major approaches are used: observation and collection of fruiting structures of larger fungi (macromycetes) by naked eye, and lens observations of substrates followed by extraction of smaller fruiting structures of discomycetes, hyphomycetes, pyrenomycetes etc. A common procedure of collecting, describing and preserving specimens recommended for inventories of macrofungi is used (Mueller et al., 2004, Biodiversity of fungi).
| 研究範圍 | Currently the database holds about 10K collection objects, 18K preparations, and 5 Type specimens (1 isotype, 1 holotype and 3 paratypes). |
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| 品質控管 | 27% of the collection specimens have been cited in one to four publications. A total of 107 publications are linked to specimens in the database, including journal papers, descriptions in the Red Book and publications of specimens in Internet mycological forums (AscoFrance, MushroomObserver, iNaturalist and others). The collections are made by the trained mycologists or amateur mycologists, the total number of collectors – 14, the majority of specimens (87%) in the collection were collected by one person (Filippova N.). Identification was performed by a total of 30 specialists through direct work in the Fungarium (Filippova N., Bulyonkova T. – a total of 5150 specimens), in other laboratories with loaned material (Zmitrovich I. – 50 specimens, Rebriev Yu. – 34, Novozhilov Yu. – 9, Khimich Yu. – 27, Popov E. – 15, Blagoveschenskaya E. – 12, and others), or making comments on identification through Internet mycological forums (Baral H. – 27 specimens, and others). About 20% of the collection specimens are currently not identified to the species rank (representatives of the systematically complex groups, like Russula, Cortinarius, Mycena, Entoloma, Inocybe, Clitocybe, and others). |
方法步驟描述:
- Fruitbodies of larger fungi are photographed and their growing conditions are described in the field, extracted from the substrate and packed in aluminium foil to be processed in the laboratory later on the day of collection.
- Macro-morphological features of sporocarps are described according to schemes required for specific systematic groups.
- Spore prints are obtained when the number of sporocarps is sufficient.
- Sporocarps are dried after processing in a drying oven under 50°C and stored as dry specimens in Ziploc bags and kraft-paper envelopes.
- The preparations are made from vital or dried specimens soaked in tap water, ammonia, or KOH (10%), with dyes when necessary (Melzer solution and Congo red).
- Microscopical characters are studied using a Zeiss Stemi-2000C stereomicroscope (providing a magnification from 6x to 50x), and Zeiss Axiostar transmitted light microscope (50x to 1000x) with Achromat 5/0.12, 10/0.25, 40/0.65 (dry) and Achromat 100/1.25 (oil immersion) lenses.
- Microphotographs are obtained under transmitted light microscopes using a AxioCam ERc5c digital camera and processed with AxioVision software.
- Measurements made using AxioVision software.
- Since 2021, the barcoding (sequencing) of collection has been initiated. We relied primarily on the ITS region using the ITS1-F and ITS4 primers TEF1 and LSU regions were amplified occasionally.
- Ready sequences are uploaded to the YSU Fungarium database in Specify 7. Sequence metadata, the edited sequence and original files are saved. Each sample may correspond to one or several sequences (different regions). Each sequence may have one or several original files with their sequencing parameters. Primer parameters are filled in a separate table.
- During the two years of the project, over 1500 sequences from about 2000 specimens were performed. About a third was a part of the revision of the large genus Cortinarius. Another large part was within the effort of raised bog fungi barcoding. The remaining specimens were from revisions of minor groups, students projects and sequencing of noteworthy finds and taxa potentially new to region or to science in general.
- Currently the dataset presents abotu 500 sequences as DNA-derived extension. The sequences linked to their specimens and contain 10 fields describing the sequence and its metadata.
收藏資料
| 蒐藏名稱 | Yugra State University Biological Collection (Fungarium YSU) |
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| 蒐藏編號 | YSU-F |
| 上層採集品識別碼 | YSU |
| 標本保存方法 | Dried |
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| 管理單位 | 計數 10,000 +/- 100 Dried specimens |
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引用文獻
- Filippova N.V., Lapshina E.D. 2016. Коллекция ваучерных образцов грибов ЮГУ: значение и основы функционирования (Reference collection of fungi of YSU – importance and operation). In: Biological collections of Yugra: collecting, fixation, storage and scientific use. Proceedings of the scientific-methodological seminar (Биологические коллекции Югры: сбор, фиксация, хранение, введение в научный оборот. Материалы научно-петодического семинара в Музее Природы и Человека. Ханты-Мансийск. 27 марта 2015 г. \ под ред. Белогай О.И., Скучас Ю.В.). Khanty-Mansiysk, 27 march 2015. P. 73-85.
- Filippova N.V., Bulyonkova T.M. 2016. Fungarium of Yugra State University. In: Biological collections of Yugra: collecting, fixation, storage and scientific use. Proceedings of the scientific-methodological seminar (Биологические коллекции Югры: сбор, фиксация, хранение, введение в научный оборот. Материалы научно-петодического семинара в Музее Природы и Человека. Ханты-Мансийск. 27 марта 2015 г. \ под ред. Белогай О.И., Скучас Ю.В.). Khanty-Mansiysk, 27 march 2015. P. 90-98.
- Filippova N, Ganasevich G, Filippov I, Meshcheryakova A, Lapshina E, Karpov D (2022) Yugra State University Biological Collection (Khanty-Mansiysk, Russia): general and digitisation overview. Biodiversity Data Journal 10: e77669. https://doi.org/10.3897/BDJ.10.e77669 https://doi.org/10.3897/BDJ.10.e77669
- Filippova N, Zvyagina E, Rudykina E, Dobrynina A, Bolshakov S (2023) The diversity of macromycetes in peatlands: nine years of plot-based monitoring and barcoding in the raised bog «Mukhrino», West Siberia. Biodiversity Data Journal 11: e105111. https://doi.org/10.3897/BDJ.11.e105111 https://doi.org/10.3897/BDJ.11.e105111
額外的詮釋資料
| 目的 | The collection is gradually growing and is opened to prospective users such as taxonomists interested in work with a particular group of fungi represented in the region and other research areas of basic and applied mycology. We support practices of actual visits for work with the collection and remote access to the database and photographs. You are kindly welcome to visit the YSU Fungarium! |
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| 維護說明 | The database of YSU Fungarium is developed using Specify 6 software and its web version, Specify 7 (available at http://specify.ugrasu.ru/, login requred) hosted on the Yugra State University server. The Specify Web Portal with legular collections exports, including pictures and sequences, is available at http://bioportal.ugrasu.ru/ |
| 替代的識別碼 | d922b606-6c94-4d51-9277-36c9b03872a7 |
| http://ipt.ugrasu.ru:8080/resource?r=fungariumysu |