Descripción
The Fungarium of Yugra State University is a systematic reference collection of fungi organized as a part of the Yugra State University Biological Collection (YSU BC). The main purpose of the Fungarium is to initiate and facilitate systematic studies of fungi in the region. It also serves for education and can be used by specialists in different applied disciplines.
The taxonomical structure of the collections currently includes the total number of species represented – about 1.5K, genera represented – about 500, families represented – about 150. The majority of the specimens in the YSU Fungarium belong to the Basidiomycota (about 80%), less to Ascomycota (10%) with few specimens of Zygomycota and Myxomycota. The majority of specimens were collected in Khanty-Mansi Autonomous Okrug (90%), with 11 other regions of Russia represented by small numbers.
The collection is gradually growing and is open to prospective users in systematics, ecology and geography as well as applied disciplines of mycology.
Registros
Los datos en este recurso de registros biológicos han sido publicados como Archivo Darwin Core(DwC-A), el cual es un formato estándar para compartir datos de biodiversidad como un conjunto de una o más tablas de datos. La tabla de datos del core contiene 9.953 registros.
también existen 1 tablas de datos de extensiones. Un registro en una extensión provee información adicional sobre un registro en el core. El número de registros en cada tabla de datos de la extensión se ilustra a continuación.
Este IPT archiva los datos y, por lo tanto, sirve como repositorio de datos. Los datos y los metadatos del recurso están disponibles para su descarga en la sección descargas. La tabla versiones enumera otras versiones del recurso que se han puesto a disposición del público y permite seguir los cambios realizados en el recurso a lo largo del tiempo.
Versiones
La siguiente tabla muestra sólo las versiones publicadas del recurso que son de acceso público.
¿Cómo referenciar?
Los usuarios deben citar este trabajo de la siguiente manera:
Filippova N, Zvyagina E, Bulyonkova T, Rudykina E (2024). The Fungarium of Yugra State University. Version 1.136. Yugra State University Biological Collection (YSU BC). Occurrence dataset. http://ipt.ugrasu.ru:8080/resource?r=fungariumysu&v=1.136
Derechos
Los usuarios deben respetar los siguientes derechos de uso:
El publicador y propietario de los derechos de este trabajo es Yugra State University Biological Collection (YSU BC). Esta obra está bajo una licencia Creative Commons de Atribución/Reconocimiento (CC-BY 4.0).
Registro GBIF
Este recurso ha sido registrado en GBIF con el siguiente UUID: d922b606-6c94-4d51-9277-36c9b03872a7. Yugra State University Biological Collection (YSU BC) publica este recurso y está registrado en GBIF como un publicador de datos avalado por Participant Node Managers Committee.
Palabras clave
Occurrence; Occurrence
Datos externos
Los datos del recurso también están disponibles en otros formatos
| Northern West Siberia collections portal | http://bioportal.ugrasu.ru/ UTF-8 Specify Web Portal |
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Contactos
- Proveedor De Los Metadatos ●
- Originador ●
- Punto De Contacto
- Originador
https://orcid.org/0000-0003-2063-4847
- Originador
- Originador
Cobertura geográfica
Specimens deposited in the YSU Fungarium were collected mainly in the taiga zone of Western Siberia (Russia). The majority of specimens were collected in Khanty-Mansi Autonomous Okrug-Yugra (94%), 150 specimens from Tomskaya oblast, and several dozens of specimens from Irkutskaya, Moskovskaya, Murmanskaya oblast and from Altay, while the rest four regions represented by a few specimens (Krasnoyarskiy Kray, Novosibirskaya Oblast’, Respublica Buryatia, Tyumenskaya Oblast’). Within administrative borders of Yugra, 6 districts are represented with majority (98%) from Khanty-Mansiyskiy district. The two main sampling areas are located in the vicinities of Khanty-Mansiysk (60N 68E) and the nearby Shapsha and Mukhrino field stations of the YSU. Major vegetation types covered by the collection are coniferous dark taiga forests and their deciduous derivates (more than half of the collection), and ombrotrophic raised bogs (comprising about 30% of the collection). Coniferous forests (dominated by Pinus sibirica, Picea obovata, and Abies sibirica) and their deciduous successions (Populus tremula, Betula pubescens) are characteristic for the taiga zone of Western Siberia. The region is highly bogged, with ombrotrophic peatlands covering about 50% of the area. Other major landscapes include floodplains of big rivers, where meadow and floodplain shrub vegetation develops.
| Coordenadas límite | Latitud Mínima Longitud Mínima [52,909, 22,148], Latitud Máxima Longitud Máxima [71,074, 172,969] |
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Cobertura taxonómica
The taxonomical structure of the collections currently includes the total number of species represented – about 1.5K, genera represented – about 500, families represented – about 150. The majority of the specimens in the YSU Fungarium belong to the Basidiomycota (about 80%), less to Ascomycota (10%) with few specimens of Zygomycota and Myxomycota. The majority of specimens were collected in Khanty-Mansi Autonomous Okrug (90%), with 11 other regions of Russia represented by small numbers.
| Reino | Fungi, Mycetozoa |
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Cobertura temporal
| Fecha Inicial / Fecha Final | 2010-01-01 / 2024-01-01 |
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Datos del proyecto
https://fungariumysu.org/moleculab/
| Título | Molecular methods in the study and assessment of biodiversity in the Northern regions |
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| Identificador | FENG-2024-0003 |
| Fuentes de Financiación | [RU] Субсидия из федерального бюджета на выполнение государственного задания "Молекулярно-генетические методы в изучении и оценке состояния биоразнообразия Северных регионов (FENG-2024-0003)" №1023041300017-6-1.6.4 от 13.03.2024 [EN] Grant from the federal budget for the implementation of the state assignment "Molecular-genetic methods in the study and assessment of biodiversity in the Northern regions (FENG-2024-0003)" No. 1023041300017-6-1.6.4 dated 13.03.2024. |
Personas asociadas al proyecto:
- Punto De Contacto
Métodos de muestreo
Specimens in the collection are accumulated by direct observation and extraction of fruiting structures of fungi. The two major approaches are used: observation and collection of fruiting structures of larger fungi (macromycetes) by naked eye, and lens observations of substrates followed by extraction of smaller fruiting structures of discomycetes, hyphomycetes, pyrenomycetes etc. A common procedure of collecting, describing and preserving specimens recommended for inventories of macrofungi is used (Mueller et al., 2004, Biodiversity of fungi).
| Área de Estudio | Currently the database holds about 10K collection objects, 18K preparations, and 5 Type specimens (1 isotype, 1 holotype and 3 paratypes). |
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| Control de Calidad | 27% of the collection specimens have been cited in one to four publications. A total of 107 publications are linked to specimens in the database, including journal papers, descriptions in the Red Book and publications of specimens in Internet mycological forums (AscoFrance, MushroomObserver, iNaturalist and others). The collections are made by the trained mycologists or amateur mycologists, the total number of collectors – 14, the majority of specimens (87%) in the collection were collected by one person (Filippova N.). Identification was performed by a total of 30 specialists through direct work in the Fungarium (Filippova N., Bulyonkova T. – a total of 5150 specimens), in other laboratories with loaned material (Zmitrovich I. – 50 specimens, Rebriev Yu. – 34, Novozhilov Yu. – 9, Khimich Yu. – 27, Popov E. – 15, Blagoveschenskaya E. – 12, and others), or making comments on identification through Internet mycological forums (Baral H. – 27 specimens, and others). About 20% of the collection specimens are currently not identified to the species rank (representatives of the systematically complex groups, like Russula, Cortinarius, Mycena, Entoloma, Inocybe, Clitocybe, and others). |
Descripción de la metodología paso a paso:
- Fruitbodies of larger fungi are photographed and their growing conditions are described in the field, extracted from the substrate and packed in aluminium foil to be processed in the laboratory later on the day of collection.
- Macro-morphological features of sporocarps are described according to schemes required for specific systematic groups.
- Spore prints are obtained when the number of sporocarps is sufficient.
- Sporocarps are dried after processing in a drying oven under 50°C and stored as dry specimens in Ziploc bags and kraft-paper envelopes.
- The preparations are made from vital or dried specimens soaked in tap water, ammonia, or KOH (10%), with dyes when necessary (Melzer solution and Congo red).
- Microscopical characters are studied using a Zeiss Stemi-2000C stereomicroscope (providing a magnification from 6x to 50x), and Zeiss Axiostar transmitted light microscope (50x to 1000x) with Achromat 5/0.12, 10/0.25, 40/0.65 (dry) and Achromat 100/1.25 (oil immersion) lenses.
- Microphotographs are obtained under transmitted light microscopes using a AxioCam ERc5c digital camera and processed with AxioVision software.
- Measurements made using AxioVision software.
- Since 2021, the barcoding (sequencing) of collection has been initiated. We relied primarily on the ITS region using the ITS1-F and ITS4 primers TEF1 and LSU regions were amplified occasionally.
- Ready sequences are uploaded to the YSU Fungarium database in Specify 7. Sequence metadata, the edited sequence and original files are saved. Each sample may correspond to one or several sequences (different regions). Each sequence may have one or several original files with their sequencing parameters. Primer parameters are filled in a separate table.
- During the two years of the project, over 1500 sequences from about 2000 specimens were performed. About a third was a part of the revision of the large genus Cortinarius. Another large part was within the effort of raised bog fungi barcoding. The remaining specimens were from revisions of minor groups, students projects and sequencing of noteworthy finds and taxa potentially new to region or to science in general.
- Currently the dataset presents abotu 500 sequences as DNA-derived extension. The sequences linked to their specimens and contain 10 fields describing the sequence and its metadata.
Datos de la colección
| Nombre de la Colección | Yugra State University Biological Collection (Fungarium YSU) |
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| Identificador de la Colección | YSU-F |
| Identificador de la Colección Parental | YSU |
| Métodos de preservación de los ejemplares | Secado |
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| Unidades curatoriales | Conteo 10.000 +/- 100 Dried specimens |
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Referencias bibliográficas
- Filippova N.V., Lapshina E.D. 2016. Коллекция ваучерных образцов грибов ЮГУ: значение и основы функционирования (Reference collection of fungi of YSU – importance and operation). In: Biological collections of Yugra: collecting, fixation, storage and scientific use. Proceedings of the scientific-methodological seminar (Биологические коллекции Югры: сбор, фиксация, хранение, введение в научный оборот. Материалы научно-петодического семинара в Музее Природы и Человека. Ханты-Мансийск. 27 марта 2015 г. \ под ред. Белогай О.И., Скучас Ю.В.). Khanty-Mansiysk, 27 march 2015. P. 73-85.
- Filippova N.V., Bulyonkova T.M. 2016. Fungarium of Yugra State University. In: Biological collections of Yugra: collecting, fixation, storage and scientific use. Proceedings of the scientific-methodological seminar (Биологические коллекции Югры: сбор, фиксация, хранение, введение в научный оборот. Материалы научно-петодического семинара в Музее Природы и Человека. Ханты-Мансийск. 27 марта 2015 г. \ под ред. Белогай О.И., Скучас Ю.В.). Khanty-Mansiysk, 27 march 2015. P. 90-98.
- Filippova N, Ganasevich G, Filippov I, Meshcheryakova A, Lapshina E, Karpov D (2022) Yugra State University Biological Collection (Khanty-Mansiysk, Russia): general and digitisation overview. Biodiversity Data Journal 10: e77669. https://doi.org/10.3897/BDJ.10.e77669 https://doi.org/10.3897/BDJ.10.e77669
- Filippova N, Zvyagina E, Rudykina E, Dobrynina A, Bolshakov S (2023) The diversity of macromycetes in peatlands: nine years of plot-based monitoring and barcoding in the raised bog «Mukhrino», West Siberia. Biodiversity Data Journal 11: e105111. https://doi.org/10.3897/BDJ.11.e105111 https://doi.org/10.3897/BDJ.11.e105111
Metadatos adicionales
| Propósito | The collection is gradually growing and is opened to prospective users such as taxonomists interested in work with a particular group of fungi represented in the region and other research areas of basic and applied mycology. We support practices of actual visits for work with the collection and remote access to the database and photographs. You are kindly welcome to visit the YSU Fungarium! |
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| Descripción de mantenimiento | The database of YSU Fungarium is developed using Specify 6 software and its web version, Specify 7 (available at http://specify.ugrasu.ru/, login requred) hosted on the Yugra State University server. The Specify Web Portal with legular collections exports, including pictures and sequences, is available at http://bioportal.ugrasu.ru/ |
| Identificadores alternativos | d922b606-6c94-4d51-9277-36c9b03872a7 |
| http://ipt.ugrasu.ru:8080/resource?r=fungariumysu |