The Fungarium of Yugra State University

Description

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 9,953 records.

1 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Filippova N, Zvyagina E, Bulyonkova T, Rudykina E (2024). The Fungarium of Yugra State University. Version 1.136. Yugra State University Biological Collection (YSU BC). Occurrence dataset. http://ipt.ugrasu.ru:8080/resource?r=fungariumysu&v=1.136

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is Yugra State University Biological Collection (YSU BC). This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: d922b606-6c94-4d51-9277-36c9b03872a7.  Yugra State University Biological Collection (YSU BC) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by Participant Node Managers Committee.

Keywords

Occurrence; Occurrence

External data

The resource data is also available in other formats

Contacts

Nina Filippova

• Metadata Provider ●
• Originator ●
• Point Of Contact

senior researcher

Yugra State University

Stroiteley street, 2

628508 Khanty-Mansiysk

Shapsha village, Khanty-Mansi Autonomous Okrug-Yugra

filippova.courlee.nina@gmail.com

https://fungariumysu.org/

Elena Zvyagina

• Originator

researcher

Yugra State University

Khanty-Mansiysk

RU

mycena@yandex.ru

https://orcid.org/0000-0003-2063-4847

Tatiana Bulyonkova

• Originator

researcher

Yugra State University

Khanty-Mansiysk

RU

ressaure@gmail.com

https://orcid.org/0000-0002-5215-2001

Elena Rudykina

• Originator

researcher

Yugra State University

Khanty-Mansiysk

RU

lena-rudykina@mail.ru

https://orcid.org/0009-0008-1333-8648

Geographic Coverage

Specimens deposited in the YSU Fungarium were collected mainly in the taiga zone of Western Siberia (Russia). The majority of specimens were collected in Khanty-Mansi Autonomous Okrug-Yugra (94%), 150 specimens from Tomskaya oblast, and several dozens of specimens from Irkutskaya, Moskovskaya, Murmanskaya oblast and from Altay, while the rest four regions represented by a few specimens (Krasnoyarskiy Kray, Novosibirskaya Oblast’, Respublica Buryatia, Tyumenskaya Oblast’). Within administrative borders of Yugra, 6 districts are represented with majority (98%) from Khanty-Mansiyskiy district. The two main sampling areas are located in the vicinities of Khanty-Mansiysk (60N 68E) and the nearby Shapsha and Mukhrino field stations of the YSU. Major vegetation types covered by the collection are coniferous dark taiga forests and their deciduous derivates (more than half of the collection), and ombrotrophic raised bogs (comprising about 30% of the collection). Coniferous forests (dominated by Pinus sibirica, Picea obovata, and Abies sibirica) and their deciduous successions (Populus tremula, Betula pubescens) are characteristic for the taiga zone of Western Siberia. The region is highly bogged, with ombrotrophic peatlands covering about 50% of the area. Other major landscapes include floodplains of big rivers, where meadow and floodplain shrub vegetation develops.

Taxonomic Coverage

The taxonomical structure of the collections currently includes the total number of species represented – about 1.5K, genera represented – about 500, families represented – about 150. The majority of the specimens in the YSU Fungarium belong to the Basidiomycota (about 80%), less to Ascomycota (10%) with few specimens of Zygomycota and Myxomycota. The majority of specimens were collected in Khanty-Mansi Autonomous Okrug (90%), with 11 other regions of Russia represented by small numbers.

Temporal Coverage

Project Data

https://fungariumysu.org/moleculab/

The personnel involved in the project:

Sampling Methods

Specimens in the collection are accumulated by direct observation and extraction of fruiting structures of fungi. The two major approaches are used: observation and collection of fruiting structures of larger fungi (macromycetes) by naked eye, and lens observations of substrates followed by extraction of smaller fruiting structures of discomycetes, hyphomycetes, pyrenomycetes etc. A common procedure of collecting, describing and preserving specimens recommended for inventories of macrofungi is used (Mueller et al., 2004, Biodiversity of fungi).

Method step description:

1. Fruitbodies of larger fungi are photographed and their growing conditions are described in the field, extracted from the substrate and packed in aluminium foil to be processed in the laboratory later on the day of collection.
2. Macro-morphological features of sporocarps are described according to schemes required for specific systematic groups.
3. Spore prints are obtained when the number of sporocarps is sufficient.
4. Sporocarps are dried after processing in a drying oven under 50°C and stored as dry specimens in Ziploc bags and kraft-paper envelopes.
5. The preparations are made from vital or dried specimens soaked in tap water, ammonia, or KOH (10%), with dyes when necessary (Melzer solution and Congo red).
6. Microscopical characters are studied using a Zeiss Stemi-2000C stereomicroscope (providing a magnification from 6x to 50x), and Zeiss Axiostar transmitted light microscope (50x to 1000x) with Achromat 5/0.12, 10/0.25, 40/0.65 (dry) and Achromat 100/1.25 (oil immersion) lenses.
7. Microphotographs are obtained under transmitted light microscopes using a AxioCam ERc5c digital camera and processed with AxioVision software.
8. Measurements made using AxioVision software.
9. Since 2021, the barcoding (sequencing) of collection has been initiated. We relied primarily on the ITS region using the ITS1-F and ITS4 primers TEF1 and LSU regions were amplified occasionally.
10. Ready sequences are uploaded to the YSU Fungarium database in Specify 7. Sequence metadata, the edited sequence and original files are saved. Each sample may correspond to one or several sequences (different regions). Each sequence may have one or several original files with their sequencing parameters. Primer parameters are filled in a separate table.
11. During the two years of the project, over 1500 sequences from about 2000 specimens were performed. About a third was a part of the revision of the large genus Cortinarius. Another large part was within the effort of raised bog fungi barcoding. The remaining specimens were from revisions of minor groups, students projects and sequencing of noteworthy finds and taxa potentially new to region or to science in general.
12. Currently the dataset presents abotu 500 sequences as DNA-derived extension. The sequences linked to their specimens and contain 10 fields describing the sequence and its metadata.

Collection Data

Bibliographic Citations

1. Filippova N.V., Lapshina E.D. 2016. Коллекция ваучерных образцов грибов ЮГУ: значение и основы функционирования (Reference collection of fungi of YSU – importance and operation). In: Biological collections of Yugra: collecting, fixation, storage and scientific use. Proceedings of the scientific-methodological seminar (Биологические коллекции Югры: сбор, фиксация, хранение, введение в научный оборот. Материалы научно-петодического семинара в Музее Природы и Человека. Ханты-Мансийск. 27 марта 2015 г. \ под ред. Белогай О.И., Скучас Ю.В.). Khanty-Mansiysk, 27 march 2015. P. 73-85.
2. Filippova N.V., Bulyonkova T.M. 2016. Fungarium of Yugra State University. In: Biological collections of Yugra: collecting, fixation, storage and scientific use. Proceedings of the scientific-methodological seminar (Биологические коллекции Югры: сбор, фиксация, хранение, введение в научный оборот. Материалы научно-петодического семинара в Музее Природы и Человека. Ханты-Мансийск. 27 марта 2015 г. \ под ред. Белогай О.И., Скучас Ю.В.). Khanty-Mansiysk, 27 march 2015. P. 90-98.
3. Filippova N, Ganasevich G, Filippov I, Meshcheryakova A, Lapshina E, Karpov D (2022) Yugra State University Biological Collection (Khanty-Mansiysk, Russia): general and digitisation overview. Biodiversity Data Journal 10: e77669. https://doi.org/10.3897/BDJ.10.e77669 https://doi.org/10.3897/BDJ.10.e77669
4. Filippova N, Zvyagina E, Rudykina E, Dobrynina A, Bolshakov S (2023) The diversity of macromycetes in peatlands: nine years of plot-based monitoring and barcoding in the raised bog «Mukhrino», West Siberia. Biodiversity Data Journal 11: e105111. https://doi.org/10.3897/BDJ.11.e105111 https://doi.org/10.3897/BDJ.11.e105111

Additional Metadata