The IPT istallation is part of the digitization and mobilization initiative in Northern West Siberia. See more information at: https://nwsbios.org/
biodiversity
Darwin Core Archive of Учет лебедя-кликуна
Occurrences of rare and protected plants in the Natural Park "Kondinskie Lakes" (West Siberia)
Rare and protected species of Natural park «Kondinskie lakes» named after L.F. Stashkevich since 1999. Набор данных включает базу данных регистрации естественно редких и краснокнижных видов высших сосудистых растений на территории природного парка «Кондинские озера» (Российская Федерация, Ханты-Мансийский автономный округ – Югра) и прилегающей территории начиная с 1999 г.
Darwin Core Archive of Occurrences of rare and protected plants in the Natural Park "Kondinskie Lakes" (West Siberia)
The Fungal Literature-based Occurrence Database for the Southern West Siberia (Russia )
Fungal literature-based occurrence database of Southern West Siberia (FuSWS) was developed to accumulate the results of previous studies of species occurrences extracted from published literature. The FuSWS database includes 29 fields describing species name, publication source, herbarium number, date of sampling, locality information, vegetation, substrate, and others. The occurrences in the database were extracted from previously published works, no herbarium collections or other unpublished records were included in the database. Currently, the databased covers 225 literature sources from about 900 publications totally for the Southwestern Siberia.
Darwin Core Archive of The Fungal Literature-based Occurrence Database for the Southern West Siberia (Russia )
Bryological collection of Yugra State University
Bryological collection of Yugra State University stores about 6K specimens of mosses and liverworts collected mainly in the West Siberia. The purpose of the Bryological collection of YSU was to make a collection of mosses and liverworts, representing various biogeographical areas and the species diversity of the Khanty-Mansi Autonomous Okrug and other regions, which would be accessible by bryologists worldwide. The study of the Khanty-Mansi Autonomous Okrug in terms of bryology is still insufficient. The regional checklist of species is quite complete, but frequency data are scarce (including rare and endangered species) due to the small number of surveyed areas. The growth of the Bryological collection began when Elena D. Lapshina started working in the Khanty-Mansi Autonomous Okrug. The first specimens were collected in 2003-2004 in the vicinity of Khanty-Mansiysk Town. In 2009, the Mukhrino Field Station of Yugra State University was established on the left bank of the Irtysh River, 25 km southwest of Khanty-Mansiysk. As a part of the inventory programme of this Station, about 600 samples of mosses and liverworts were collected, representing the typical bryoflora of the middle taiga of Western Siberia (Lapshina and Pisarenko 2013). A significant part of the collection of bryophytes (2141 samples) was made during a series of expeditions organised by the Museum of Nature and Man (Khanty-Mansiysk) at the eastern slope of the Subpolar Urals. In 2013, the region of Neroyka mountain – one of the highest peaks of the Ural Mountains, was inventoried (Konstantinova and Lapshina 2014, Lapshina et al. 2015, Lapshina et al. 2016). The upper reaches of the Puyva River were visited in the field season of 2015 (Konstantinova and Lapshina 2017, Skuchas and Lapshina 2018). In 2019, a large collection of bryophytes (683 specimens) was made in upper and middle reaches of the Khulga River (Lapshina et al. 2020). These collections from Khanty-Mansi region were supplemented in 2017 by about 500 specimens of mosses and liverworts from the eastern slope of the Polar Urals in Yamal-Nenets Autonomous Okrug, Yanganape Carbonate Mountain range. A small collection (168 specimens) was made in 2017 in a unique mire ecosystem within the territory of "Vogulka" protected area. Other well-sampled areas include the Natural Parks "Kondinskie Ozera" and "Numto". To date, specimens from about 20 key areas have been accessed in the collection. Filippova N, Ganasevich G, Filippov I, Meshcheryakova A, Lapshina E, Karpov D (2022) Yugra State University Biological Collection (Khanty-Mansiysk, Russia): general and digitisation overview. Biodiversity Data Journal 10: e77669. https://doi.org/10.3897/BDJ.10.e77669
Darwin Core Archive of Bryological collection of Yugra State University
The checklist of fungi of the Natural park «Kondinskie lakes»
The dataset includes a checkist of fungi and myxomycetes species registered on the territory of the Natural park «Kondinskie lakes» (Russian Federation, Khanty-Mansi Autonomous Okrug) from 1949 to 2024. Various researchers studied the funga of the park area: Iraida V. Stavishenko worked in the area studying wood-decay fungi (2003-2008, 2017), Konstantin A. Fefelov visited the area to reveal diversity of myxomycetes (2006-2008), Nina V. Filippova revealed communities of larger fungi of bogged habitats (2006-2007), and Elena A. Butunina have been working on permament position in the park since 2016. Аccording to the data for 2024, the list of funga includes 437 species registered on the territory of the Park. The collections of specimens collected in the area are stored in different organizations where the visiting researchers work (mainly in Ekaterinburg - Institute of plant and animal ecology and Khanty-Mansiysk - Yugra State University). The collection of specimens of the Natural Park includes about 500 dried specimens of fungi (curated by Elena A. Butunina, https://doi.org/10.15468/975ads).
Darwin Core Archive of The checklist of fungi of the Natural park «Kondinskie lakes»
eDNA-based occurrence dataset on peatland fungal communities studied by metabarcoding in Northwestern Siberia
The community of large fungi of raised bog habitats was studied by plot-based monitoring for 10 years (Filippova et al, 2019). To supplement direct observation of fruitbodies with environmental DNA approach, we completed a series of sampling of common substrates in the same locality. Five major substrates were subjected to metabarcoding analysis: peat (dead parts of sphagnum parts to peat transition 2-30 cm below the surface), peat from deeper levels (50- up to 5 m below the surface), bog plants litter, wood and mycorrhizal roots. Totally 285 samples were sequenced and analysed. Metabarcoding of ITS2 region (Illumina MiSeq platform) revealed about 9200 SHs and about 2000 Linnean species). The community analyses of different substrates based on metabarcoding analysis showed differences between different bog habitats (treed bogs and lawns); high difference between all litter types of bog plants; and low difference between roots of two bog pine species. The analyses also showed high influence of season on community composition (from the beginning to the end of summer), and peat depth for the community of peat substrate. The species composition of macromycetes observed by direct observation generally coincided with that obtained from metabarcoding (but metabarcoding revealed larger diversity of micro-fungi cryptically inhabiting different substrates).
Darwin Core Archive of eDNA-based occurrence dataset on peatland fungal communities studied by metabarcoding in Northwestern Siberia
Genus Myricaria at the CSBG SB RAS Digital herbarium (NS, NSK collections)
The Central Siberian Botanical Garden of the Siberian Branch of the Russian Academy of Sciences (CSBG SB RAS) is the largest botanical institution in the Asian part of Russia. Founded in 1946, the CSBG SB RAS is historically a consortium of two herbarium collections with their own acronyms (NS and NSK) and registration in the Index Herbariorum. Collections couny about 700 000 herbarium specimens of vascular plants sampled in Siberia, Russian Far East, Europe, Asia and America. All specimens from the genus Myricaria Desv. (Tamaricaceae Link) stored in NS and NSK herbarium collections were digitized and placed in CSBG SB RAS Digital herbarium (http://herb.csbg.nsc.ru:8081). The dataset consists of 368 records of digitized Myricaria herbarium specimens. For each specimen, the species name, locality, collection date, collector, ecology and revision label are recorded.
Darwin Core Archive of Genus Myricaria at the CSBG SB RAS Digital herbarium (NS, NSK collections)
Gastropods of the mole burrows in the forest zone of Western Siberia
The distribution of gastropods in mole burrows in the forest zone of Western Siberia was studied for the first time. The results obtained significantly expand our understanding of the ecology of the common mole (Talpa europaea) and fauna living in its burrows on the eastern border of its range.
Darwin Core Archive of Gastropods of the mole burrows in the forest zone of Western Siberia
A new species and one interesting finding from Mukhrino bog, Western Siberia
During the monitoring of communities of microfungi on plant litter of a raised bog during the summer 2014, several presumably new and some interesting species were found. The specimens were stored in the Fungarium YSU. One of species (Rhizoscyphus ericae) was identified based on morphological characters and represented one of few reports of this species as a teleomorph, and the first report (from DNA or as a teleomorph) from Sphagnum, although it is typically associated with Sphagnum/bog habitats. The second species was identified based on morphological characters as a new species of Fuscolachnum sp. The ITS nrDNA sequences of all three specimens were received in the Botanical Institution of Komarov, LE (by Eugene Popov). This project is aimed to identify the species through UNITE (PlutoF) and to publish the final dataset of two species in GBIF as a training during the seminar on "Identifying and publishing HTS/Sanger DNA sequence datasets", Copenhagen, Denmark on 14-15 January 2019 (https://sisu.ut.ee/publish-sequence-datasets/avaleht).
Darwin Core Archive of A new species and one interesting finding from Mukhrino bog, Western Siberia
New species of macromycetes for regions of the Russian Far East - 2024
The dataset represents the Supplementary material for the article devoted to the new finds of macrofungi in regions of Russian Far East, published in Rebriev et al., 2024. A total of 53 species of macromycetes are reported for the first time from 6 administrative units of the Russian Far East: Amur, Jewish Autonomous, Magadan, and Sakhalin Oblast, Khabarovsk and Primorskiy Krai. 11 species are reported as the first records for the Russian Far East. For some of the rare species, notes are given about the main differences in morphology and ecology, about the features of distribution. The identification of Pluteus hibbettii and Rhizopogon laricinus was confirmed by molecular genetic methods. The material was deposited in ABGI, LE, MAG, SVER, TOB, VLA herbaria as well as in the Yu. Rebriev (YuR) and A. Shiryaev (Shiryaev) personal collections.
morphological and molecular genetic identification
Darwin Core Archive of New species of macromycetes for regions of the Russian Far East - 2024
Plot-based observations of terrestrial macrofungi in different forest types of boreal zone in West Siberia (2015-2024)
The dataset includes the results of a long-term monitoring program for larger fungi fruiting using permanent plots located in different forest types in central part of Western Siberia (nearby Khanty-Mansiysk). Our goal was to describe the quantitative and qualitative structure and spatial variation of the community of macromycetes, show its dynamics seasonally and inter-annually and also elucidate the relationship between the fruiting and climate variables. A total of 320 circular 5 m^2 (for a total area of 1600 m^2) sub-plots were visited weekly during vegetation seasons 2015-2024 and carpophores of different fungal taxa were counted. The dataset includes about 20K plot-based observations (=sampling events) made from 2015 until 2024 with corresponding about 17K occurrence records of macromycetes identified to species. Each plot was examined 72 times over the course of 10 years. Plot-based observations with zero records mark absence of species in a certain plot and time.
Darwin Core Archive of Plot-based observations of terrestrial macrofungi in different forest types of boreal zone in West Siberia (2015-2024)
Plants of the Botanical Garden of Surgut State University (Surgut, Russia)
The Botanical Garden in Surgut State University is the northernmost in Western Siberia and one of the northernmost botanical gardens in Russia; it is the main outpost for the advancement of new agricultural and biotechnologies to the Far North, incl. to the Arctic regions on the principles of stepwise acclimatization of valuable species and varieties of plants. The work is carried out by the staff of the Institute of Natural and Technical Sciences (senior researcher G.M. Kukurichkin, senior researcher I.N. Turbina, senior researcher N.V. Nakonechny, senior researcher R.Kh. Bordey), an employee of the Department of Ecology (associate professor V.N. Tyurin), employees of the Center for Shared Equipment (laboratory assistants D.V.Bogdanova, R.S. Vdovkin, A.L. Romanchuk, M.D. Derbishev, N.S. Plesovskikh and volunteers). Ботанический сад в Сургуте является самым северным в Западной Сибири и одним из самых северных ботсадов в России, он является основным форпостом для продвижения новых агро- и биотехнологий на Крайний Север, в т.ч. в арктические регионы на принципах ступенчатой акклиматизации ценных видов и сортов растений. Работа выполняется сотрудниками НОЦ института естественных и технических наук (с.н.с. Г.М. Кукуричкин, с.н.с. И.Н. Турбина, с.н.с. Н.В. Наконечный, с.н.с. Р.Х. Бордей), сотрудником кафедры экологии (доц. В.Н. Тюрин), сотрудниками Центра коллективного пользования (лаборанты Д.В. Богданова, Р.С. Вдовкин, А.Л. Романчук, М.Д. Дербишев, Н.С. Плесовских и волонтерами). The purpose of the study: creation and maintenance of a systemically organized and socially demanded collection of living plants for the conservation of biodiversity and enrichment of the plant world, the development of applied crop production, the implementation of scientific, educational and educational activities. Цель исследования: создание и поддержание системно организованной и социально востребованной коллекции живых растений для сохранения биоразнообразия и обогащения растительного мира, развития прикладного растениеводства, осуществления научной, учебной и просветительской деятельности. Research objectives: 1) the formation of collections of living plants; 2) study of the adaptive potential of introduced species; 3) search for new agricultural technologies; 4) identification of valuable plant resources; 5) preservation of the gene pool of rare and endangered plant species; 6) environmental education; 7) improving the urbanized environment. Задачи исследования: 1) формирование коллекций живых растений; 2) изучение адаптационного потенциала интродуцентов; 3) поиск новых агротехнологий; 4) выявление ценных растительных ресурсов; 5) сохранение генофонда редких и исчезающих видов растений; 6) экологическое просвещение; 7) совершенствование урбанизированной среды.
Darwin Core Archive of Plants of the Botanical Garden of Surgut State University (Surgut, Russia)
The population of dragonflies in the vicinity of the village of Yugan, Surgut region
The dragonflies inventory work carried out from June 20 to July 20 in 2012 and 2013. The collection of material was made in the vicinity of the biological station of the Surgut State University in the village of Yugan, Surgut region.
Darwin Core Archive of The population of dragonflies in the vicinity of the village of Yugan, Surgut region
Winter limonid mosquitoes (Diptera: LimoniidaeI)
The genus of the limoniid micropore mosquito Chionea Dalman, 1816 has 38 species and subspecies and has a typical Holarctic distribution. In the fauna of the Palaearctic region, this genus is represented by two subgenus: Chionea Dalman, 1816 and Sphaeconophilus Becker, 1912, and 20 species and subspecies. For the fauna of Russia, 5 species were previously indicated; the species Chionea (Ch.) Crassipes Boheman, 1846 is represented by three subspecies (Oosterbroek, 2016). As a rule, mosquitoes of this genus found in the cold season and do not reach high numbers. Mosquitoes are clearly visible mainly in the snow and usually only a few individuals, therefore, even in large collections, they are represented by single specimens. Thus, information about mosquitoes of this genus in Russia is scattered and fragmentory (Pilipenko, at all, 2016). Род микроптерных зимних комаров-лимониид Chionea Dalman, 1816 насчитывает 38 видов и подвидов и имеет типичное голарктическое распространение. В фауне Палеарктики этот род представлен двумя подродами: Chionea Dalman, 1816 и Sphaeconophilus Becker, 1912 и 20 видами и подвидами. Для фауны России ранее было указано 5 видов, вид Chionea (Ch.) crassipes Boheman, 1846 представлен тремя подвидами (Oosterbroek, 2016). Как правило, комары этого рода встречаются в холодный период года и не достигают высокой численности. Комары хорошо видны преимущественно на снегу и обычно – лишь отдельные особи, поэтому даже в крупных коллекциях они представлены единичными экземплярами. Таким образом, имеются только отрывочные, разрозненные сведения о комарах этого рода в России (Pilipenko, at all, 2016).
Darwin Core Archive of Winter limonid mosquitoes (Diptera: LimoniidaeI)
New species of macromycetes for regions of the Russian Far East - 2022
The information is based on article devoted to the new finds of macrofungi in regions of Russian Far East (Rebriev et al., 2022). The dataset includes 82 occurrence records of 61 species and intraspecific taxa of macromycetes are reported for the first time from 6 administrative units of the Russian Far East: Amur Oblast, Jewish Autonomous Oblast, Magadan Oblast, Kamchatka Krai, Khabarovsk Krai and Primorskiy Krai. Each annotated record provides details about specimen ecology and collection information: locality, habitat, substrate, specimen herbarium numbers, collectors and determiners as well as notes on rarity and peculiar features of some species. The identification of some specimens by morphological methods is confirmed by molecular genetic data. Some species were isolated into pure culture (Granulobasidium vellereum, Phallus ultraduplicatus, Echinochaete russiceps). The material was accessioned in LE F (Saint Petersburg), MAG (Magadan), SVER (Ekaterinburg), VLA (Vladivostok), as well as in the Yu. Rebriev (YuR) personal collection.
Darwin Core Archive of New species of macromycetes for regions of the Russian Far East - 2022
Species composition of the zooperiphyton of the reservoir-cooler CHPP-1 (Russia, Tyumen)
The taxonomic composition of the zooperiphyton of the cooling reservoir of Tyumenskaya CHPP-1 (Tyumen, Russia) in 2016 was studied. During the study period, 75 taxa were identified, of which 53 were identified to the species, 12 to the genus, 6 to the family, 2 to the type, one each to the class and subclass.
Darwin Core Archive of Species composition of the zooperiphyton of the reservoir-cooler CHPP-1 (Russia, Tyumen)
Fungal Culture Collection of Yugra State University
This dataset represents the living culture collection of basidiomycetes and ascomycetes maintained by the Fungarium of Yugra State University (Collection Code: YSU-C). The collection comprises approximately 250 fungal strains, serving as a repository for the mycobiota of Western Siberia, with a special focus on the unique ecosystems of ombrotrophic bogs and coniferous forests. The collection is ecologically and biotechnologically diverse, encompassing several key groups: Saprotrophic fungi from peatlands (tagged bog saprotroph), with potential applications in the bioremediation of wetland habitats and the creation of peat-based fertilizers. Ectomycorrhizal fungi (tagged Mycorrhiza), which are candidates for the development of mycorrhizal inoculants. Medicinally significant fungi (tagged Medicinal), including species like Ganoderma and Hericium, relevant for the production of dietary supplements and pharmaceuticals. Cultivated and industrial strains of edible mushrooms (e.g., Pleurotus, Lentinula, Flammulina), obtained from commercial sources or store-bought fruiting bodies. Wild macromycetes and microfungi, rare and protected species, collected during field surveys, providing a baseline for the region's fungal diversity. The main part of the collection has been verified by sequencing. The dataset includes sequences linked to the samples.
Darwin Core Archive of Fungal Culture Collection of Yugra State University
Учет следов по первому снегу (Белая тропа)
Darwin Core Archive of Учет следов по первому снегу (Белая тропа)
New species of macromycetes for regions of the Russian Far East
The information is based on articles devoted to the new finds of macrofungi in regions of Russian Far East (Rebriev et al., 2020, 2021). The dataset includes 307 occurrence records of 189 identified to species. Each annotated record provides details about specimen ecology and collection information: locality, habitat, substrate, specimen herbarium numbers, collectors and determiners as well as notes on rarity and peculiar features of some species. The material was accessioned in LE (Saint Petersburg), MAG (Magadan), SVER (Ekaterinburg), VLA (Vladivostok), ABGI (Blagoveshensk) herbaria, as well as in the Yu. Rebriev (YuR), H. J. Beker (HJB) and H. Kotiranta (HK) personal collections. The identification was carried out mainly by morphological methods. In some cases, a molecular genetic method was used as an additional or main one.
Darwin Core Archive of New species of macromycetes for regions of the Russian Far East
Occurrence dataset of protected fungal species for the Red Data Book in Yugra region, Western Siberia
The objective of this dataset was to integrate open data on occurrences of protected fungal species in the Yugra region to utilize these data to assess the conservation status of species for the new edition. The dataset can be considered as an electronic appendix to the Red Data Book of Yugra Region, containing the original occurrences data for this publication. The dataset includes 21 fields and 1180 records on findings of fungal species listed in the third edition of the Red Data Book of Yugra. The core information about the occurrences covers their scientific name, bibliographic citation (if published in scientific literature), references (if published in a dataset), geography of the finding, date, presence of specimens in collections, and authorship.
Darwin Core Archive of Occurrence dataset of protected fungal species for the Red Data Book in Yugra region, Western Siberia
The data set includes a database of the collection of vascular plants, mosses and lichens collected in the territory of the Natural Park "Numto" (Russia, KhMAO-Yugra) from 1997 to 2020. The first samples were collected by junior researcher Glazunov Valery Alexandrovich. At that time, the study of the park's territory was just beginning. The research was conducted in the vicinity of the Numto indigenous village. Gradually, the southern part of the park was surveyed, then the northern part. At the moment, the collection includes more than 200 samples. The total number of flora found in the park is 277 species.
Darwin Core Archive of Herbarium of Numto Nature Park
It became a matter of common knowledge that the fauna of Lake Baikal, like many of its other features, are unique. Benthic communities of the littoral part, demonstrating highest diversity in the lake ecosystem, were the area of researchers concern for a long time. However, a part of the littoral, called splash zone (hygroarenal), an ecotone – a transitional area of environmental media (water, soil and air), remains poorly studied. Meanwhile, this zone is inhabited by curious organism communities dwelling in interstitial spaces under highly unstable conditions. It is well known that these communities include specific species and species from the adjacent littoral habitats and terrestrial biotopes. Besides, they exhibit high abundance and biomass values. This dataset presents a list of multicellular animal findings from rocky and sandy lake beaches above the water’s edge, permanently or temporarily wetted by capillary water and waves. It is based on literature sources (63%), including 27 entries, and original data (37%). The dataset lists representatives of 17 classes attributed to 7 invertebrate animal types. Rotifera displays the highest number of species and subspecies (66 of 24 genera), 42 species (23 genera) are from Nematoda group. Chironomidae are represented by 27 species, Turbellaria – 23, Oligochaeta – 1r6, Amphipoda – 15, Cyclopoida – 11. The remaining taxonomic groups, Polychaeta, Gastrotricha, Hirudinea, Gastropoda, Isopoda, Bathynellidae, Tardigrada, Cladocera, Ostracoda, Harpacticoida, Acariformes, Collembola, Plecoptera and Trichoptera contain 1 to 8 species each.
Darwin Core Archive of Fauna of the splash zone of Lake Baikal
Zoocenosis of the mole burrows in the forest zone of Western Siberia
For the first time, data on the distribution of vertebrates and invertebrates in moles burrows were obtained for the territory of the forest zone of Western Siberia. The role of each of the main factors determining the distribution of the mole in the territory of the forest zone of Western Siberia is assessed. The results significantly expand the understanding of the ecology of the common mole and the animals living in its burrows on the Eastern border of its range.
Darwin Core Archive of Zoocenosis of the mole burrows in the forest zone of Western Siberia
Alien species of hydrobionts in the Tyumen region
The first mention of invasive species of hydrobionts in the hydroecosystems of the Tyumen region was in July 1989. Currently, we are collecting information on more than 10 invasive species of hydrobionts. Most of the finds belong to the south of the Tyumen region (the Tura river, the Pyshma river, the cooling pond of the Tyumen CHPP-1). Some finds were discovered when moving north, in the Irtysh River. This publication presents data on findings of invasive species from 1989 to 2021, which relate to 10 species. All types of data processing available in the collection of the Institute for the Development of the North. The research was funded by RFBR and Tyumen Region, project number 20-44-720008
Darwin Core Archive of Alien species of hydrobionts in the Tyumen region
Зимние маршрутные учеты в Природном Парке "Нумто".
Darwin Core Archive of Зимние маршрутные учеты
Darwin Core Archive of Учет заселяемости гоголятников
Coleoptera of mole burrows in the forest zone of Western Siberia
The occurrences of Coleoptera in mole burrows in the forest zone of Western Siberia was studied for the first time. The results obtained significantly expand our understanding of the ecology of the common mole (Talpa europaea) and fauna living in its burrows on the eastern border of its range.
Darwin Core Archive of Coleoptera of mole burrows in the forest zone of Western Siberia
Distribution of freshwater sponges in Western Siberia
Sponges are one of the oldest groups of multicellular animals leading an attached lifestyle. The first mention of sponges is found in Aristotle in the 4th century BC. The first in-depth information about the biology of sponges was given by R.E. Grant, he describes the structure of the pores of sponges and gives them a separate name Poriphera. At the end of the 19th century, it was proved that sponges are multicellular animals. In 1894-1895, in the late system of Haeckel, sponges are considered as an independent type of Spongia in the animal kingdom. The first data on sponges in the north of Western Siberia are described in the article by N. Annandale (1915), where Spongilla arctica Ann. was noted in the upper reaches of the Shchuchya River on the Yamal Peninsula. In the 30s. of the 20th century Spongillidae were also found in the southern part of the Gydan Bay. During this period, in the north of the USSR, freshwater sponges were noted from the whater bodies of the Polar Urals and the Kola Peninsula. In P.D. Frisky monograph, in addition to the above-mentioned species for Siberia, such species as Spongilla lacustris (L.), Ephydatia fluviatilis (L.), Ephydatia mulleri (Lieb.) are indicated.
Darwin Core Archive of Distribution of freshwater sponges in Western Siberia
Long-term survey of algae of the Lena Delta Wildlife Reserve including data on chemistry of waters
The dataset presents the summarized data on the algal flora of Lena Delta Wildlife Reserve, including the lower reaches of the Lena River and Lena Delta distributary channels, adjoining areas of the Laptev Sea (Tiksi Bay, Neyelova Gulf and Buor-Khaya Gulf); lakes, streams and swampy areas of the lower Lena River basin area; waterbodies and watercourses on Kotelny island (New Siberian Islands archipelago). Dataset includes data on planktonic, benthic and periphytic algal communities. The dataset is based on published works and on our own samples collection. Part of reported events based on later sampling have data on chemical composition of waters were samples were collected. Part of occurrences that based on later sampling has data on abundance (cells per liter) and biomass (mg per liter) of particular species. We plan consistently replenish the dataset as new samples become available.
Darwin Core Archive of Long-term survey of algae of the Lena Delta Wildlife Reserve including data on chemistry of waters
Зимние маршрутные учеты в заповеднике «Малая Сосьва» (Ханты-Мансийский Автономный Округ)
Зимний маршрутный учет используется для определения численности охотничьих видов на особо охраняемых территориях и является одним из основных методов мониторинга состояния популяций животных. Учеты проводятся в зимнее время года, где фиксируются пересечения следов на снегу с маршрутом учетчика. Пересчет числа пересечений следов на площадь идет с использованием коэффициентов активности животных, площади разных экосистем, и дальности наблюдения (для птиц). Первичные полевые данные вносятся в карточку учета, а затем переносятся в базу данных и аналитические инструменты для подсчета численности и ее динамики. Подробнее методика учета описана в (Методические рекомендации ...). Зимний маршрутный учет - основной инструмент, позволяющий оценить численность охотничьих зверей и оседлой птицы на территории заповеднике. Учеты проводятся с Х года. В настоящее время учет проводится на 18ти маршрутах. Протяженность одного маршрута варьирует от 3 км до 30 км, общая протяженность всех маршрутов составляет около Х км. Учеты проводятся раз в год в январе-феврале. Публикация данных зимних маршрутных учетов осуществляется по инициативе Центра мобилизации данных о биоразнообразии Севера Западной Сибири (https://nwsbios.org/oopt-templates/). Исходные данные из карточек маршрутных учетов вносятся в шаблон таблицы иксель, подготовленный с учетом формата данных Darwin Core. Аналитические данные (коэффициэнты активности животных, площади экосистем) в таблицах отсутствуют и приводятся в описании метаданных в разделе Методика.
Darwin Core Archive of Зимние маршрутные учеты в заповеднике «Малая Сосьва» (Ханты-Мансийский Автономный Округ)
Route bird census in Natural Park «Kondinskie lakes»
Bird census in Natural Park «Kondinskie lakes» made by complex methods (the methods are specified in the samplingProtocol field) by an ornithologist working in the park during 2002-2005 and 2016-2018 years.
Darwin Core Archive of Route bird census in Natural Park «Kondinskie lakes»
Herbarium of Yuganskiy State Nature Reserve
Darwin Core Archive of Herbarium of Yuganskiy State Nature Reserve
eDNA-based occurrence dataset on fungi from forest monitoring plots in Northwestern Siberia
During the monitoring of fungal communities at permanent plots in different types of forests in boreal taiga zone (https://doi.org/10.15468/ge1hkl ), soil and forest litter samples were collected for sequencing of nrITS region of fungal eDNA on NanoporeMinION platform. A total of 46 samples were collected from 6 sites in different types of forest communities. At each site, 3 to 5 samples of each substrate (soil and litter) were collected. Sampling was conducted in August during the period of active fungal community development. The substrate were collected from several points located 10 meters apart. Within each point, a composite sample about 50 g was collected. Samples were frozen on the day of collection until subsequent total DNA extraction. Prior to extraction, the substrate was dried in a drying oven at 40°C and ground to a powder using a homogenizer. Approximately 0.05 g of this sample was used for DNA extraction following the manufacturer's protocol (SileksMagNA). Subsequent sample preparation for sequencing on the Nanopore MinION platform was performed using the published protocol (dx.doi.org/10.17504/protocols.io.kxygx3jwkg8j/v1). The obtained sequences were processed using QIIME2 (Quantitative Insights Into Microbial Ecology 2, version 2023.9) with the following parameters (blastn;2.6.0+;e-value cutoff: 0.001). Clustering was performed using the Blast+ algorithm with 99% similarity. For taxonomic assignment, the UNITE database (version 9.0 2022.10.16) was used. Metabarcoding of the ITS region (Nanopore MinION) revealed about 2300 SHs and 730 Linnean species. The dataset represents an occurrence table with the DNA-derived extension table based on guidelines (Abarenkov et al. 2023). The first table (Occurrence Core) has 29 fields to describe features of samples and observed taxonomic occurrences with their abundances (number of reads). The related DNA-derived data table contains sequences linked to each occurrence with their metadata.
Darwin Core Archive of eDNA-based occurrence dataset on fungi from forest monitoring plots in Northwestern Siberia
The checklist of vertebrates of the Natural park «Kondinskie lakes»
The dataset includes a list of vertebrate species registered on the territory of the Natural park «Kondinskie lakes» (Russian Federation, Khanty-Mansi Autonomous Okrug) from 1949 to 2019. Various researchers studied the park vertebrate animals: A.M. Vasin (1992), V.P. Lykhvar (1992), V.N. Vorobyev (1992), F.S. Buydalina (1992), E.G. Larin (from 2002 to present), S.N. Gashev (2004-2011), V.P. Starikov (2017), K.A. Bernikov (2017), A.V. Morozkina (2017), E.S. Sarapultseva (2017). According to the data for 2019, the list of vertebrates includes 196 species registered on the territory of the Park.
Darwin Core Archive of The checklist of vertebrates of the Natural park «Kondinskie lakes»
Fungal literature records database of the Northern West Siberia (Russia)
The mycological research in the Northern part of West Siberia stems from isolated studies in the beginning of the 20th century, but regular and systematic research dates back to the 1970-80s. Over the following decades several dozens of researches have worked in the area and more than four hundred scientific works have been published. FUngal Records Database of Northern West Siberia (FuNWS) was developed to accumulate the results of previous studies of species distributions. The FuNWS database includes 28 fields describing species name, publication source, herbarium number, date of sampling, locality information, vegetation, substrate, and others. The occurrences in the database were extracted from previously published works, no herbarium collections or other unpublished records were included in the database. Presently, the dataset includes about 22000 of fungal occurrences recorded in the region, reported from about 130 scientific publications. According to the database summary report, there are about 3358 species identified within the region up-to-date. The richest studied classes are Agaricomycetes (60%) and Lecanoromycetes (30%) with totally 25 classes represented.
Darwin Core Archive of Fungal literature records database of the Northern West Siberia (Russia)
Darwin Core Archive of Осенний учет боровой птицы
Plot-based observations of macrofungi in raised bogs in Western Siberia (2014-2024)
The dataset presents the results of a long-term monitoring program for larger fungi fruiting using permanent plots located in different vegetation communities of a raised bog in central part of Western Siberia (nearby Khanty-Mansiysk, Mukhrino Field Station). Our goal was to describe the quantitative and qualitative structure and spatial variation of the community of macromycetes, to show its dynamics seasonally and inter-annually and also elucidate the relationship between the fruiting and climate variables. A total of 263 circular 5 m^2 (for a total area of 1315 m^2) plots were visited weekly during vegetation seasons 2014-2024 and carpophores of different fungal taxa were counted. By the end of 2024 vegetation season, 110 series of counts were performed, meaning that each micro-plot was observed 110 times over the 11-years period. The dataset includes about 30K plot-base observations (=sampling events) made from 2014 until 2024 with corresponding about 10K occurrence records of macromycetes identified to species. Plot-based observations with zero records mark absence of species in a certain plot and time. The accumulated collection of specimens corresponding to counting events was sequenced in 2023 and taxonomical names corrected according to molecular identification.
Darwin Core Archive of Plot-based observations of macrofungi in raised bogs in Western Siberia (2014-2024)
Fungarium of Central Siberian Botanical Garden, NSK (curated by Gorbunova Irina A.)
The collection of macromycetes (larger fungi) was made by I.A. Gorbunova during various expeditions in the southern part of Western Siberia, in specific areas of Eastern Siberia, and in other regions of Russia over different years. The collection is stored in the field format at the Laboratory of Lower Plants of CSBG (Novosibirsk). As the specimens are processed, a portion of the collection is inserted into the NSK herbarium. This dataset includes digitized and partially sequenced samples of interesting or new findings for the region. As the remaining part of the collection is digitized, it will be added to this dataset. Each specimen includes information from standard label fields, and many samples have photographs and sequences.
Darwin Core Archive of Fungarium of Central Siberian Botanical Garden, NSK (curated by Gorbunova Irina A.)
Species Composition of the Zooperiphyton of the Beshkil River (Tyumen region)
Western Siberia is covered by a network of medium and small rivers (Western Siberia, 1963). The Beshkil River belongs to the small rivers of the Tyumen region, the mouth of the river is located 87 km. on the left bank of the river Iset. Small rivers are characterized by a lower flow rate and depth. They are overgrown with higher aquatic vegetation, they heat up better, and the process of silt accumulation takes place in them more intensively (Sharapova, 2007). On most rivers and lakes in the south of the Tyumen region, studies of zooperiphyton have not been carried out; there are no data on the species composition. Data set for the river. Beshkil includes 39 species of organisms. The research was funded by RFBR and Tyumen Region, project number 20-44-720008
Darwin Core Archive of Species Composition of the Zooperiphyton of the Beshkil River (Tyumen region)
Plot-based observations of terrestrial macrofungi in Natural park «Kondinskie lakes»
The dataset contains records of macromycetes (macrofungi) from two permanent plots in pine forests. Each plot consists of 20 circular subplots, following the methodology described by (Mueller et al., 2004, Biodiversity of fungi...). The plots were established in 2024. The survey was conducted six times over two years, with plans for continued monitoring over multiple years.
Darwin Core Archive of Plot-based observations of terrestrial macrofungi in Natural park «Kondinskie lakes»
The purpose of the research is the studying of the flora of waterbodies and watercourses of the city of Tobolsk (Tyumen Region, Russia). The work is based on the author's hydrobotanical studies, which have been carried out in the city since 2015. The herbarium materials of the city of Tobolsk and literature sources were also studied. Tobolsk is a city in the Tyumen region (Russia) located at the confluence of the Tobol and Irtysh Rivers. The main part of the city is located on the right coast of the Irtysh River, two microdistricts (Levoberezhje and Sumkino) are located on the left coast of the river. The total area of the city is 222 km2. The water bodies of the city are numerous and diverse. Natural waterbodies and watercourses are represented by the Tobol and Irtysh Rivers, several small rivers (Kurdyumka, Slesarka, Bekerovka, Abramovka) and streams – a tributaries of the Irtysh River and small rivers. Floodplain lakes and channels between them are also numerous in the city. In addition, waterlogged areas of lowland (minerotrophic) bogs, swampy forests and floodplain meadows are common. Anthropogenic waterbodies include hydrous quarries, excavations, drainage ditches and reservoirs, ponds, roadside ditches, puddles.
Darwin Core Archive of Macrophyte flora of Tobolsk
Herbarium of the Institute of the problems of Northern development (TMN)
The first speciments of the Herbarium of the Institute of the Problems of Northern Development (IPDN) were collected in 1992-1993. At present, the herbarium contains about 21 thousand specimens of vascular plants. Most of the samples were collected in Western Siberia (Tyumen Region, Yamal-Nenets Autonomous Area, Khanty-Mansi Autonomous Area - Yugra). Some speciments were collected in other regions - Sverdlovsk region, Komi Republic, Republic of Sakha (Yakutia). A small part of the speciments from other collections. Main collectors: Elza Valeeva, Valerii Glazunov, Svetlana Nikolaenko, Natalia Khozyainova. Since 2016, the Herbarium has an international acronym TMN. In the first version we present a dataset of all holdings of spore plants (Pteridophyta) in the Herbarium of the Institute of the Problems of Northern Development, totalling 525 specimens collected during 1964–2021, which are referable to 50 species. All specimens were georeferenced with the utmost precision available.
Darwin Core Archive of Herbarium of the Institute of the problems of Northern development (TMN)
State Cadastr Animal Monitoring in Yuganskiy Nature Reserve (1988-2018)
The program "Inventory of Flora and Fauna of Nature Reserves" is initiated between all nature protected areas in Russia in a standardized way. The program was started in the Yuganskiy Nature Reserve in 1988 and will be continued in the future. Different protocols of inventory and quantitative monitoring are used for different biodiversity groups, e.g. winter tracks counts, bird census, geobotanical releves, and others. They will be described in details in the future update of the dataset. Present dataset represents species lists of Mammalia, Aves, Reptilia and Amphibia, registered in the Nature Reserve from 1988 to 2018. The data on population status (occurrenceStatus) and habitat condition (occurrenceRemarks) averaged for the entire observation period are provided in the Extension.
Darwin Core Archive of State Cadastr Animal Monitoring in Yuganskiy Nature Reserve (1988-2018)
List of medicinal macromycetes of the Tomsk region with antitumor, antibacterial, antioxidant and immunomodulatory activity
List of medicinal macromycetes of the Tomsk region ...
Darwin Core Archive of List of medicinal macromycetes of the Tomsk region with antitumor, antibacterial, antioxidant and immunomodulatory activity
Darwin Core Archive of Учет птиц на весеннем пролете
New species of macromycetes for regions of the Russian Far East - 2023
The information is based on article devoted to the new finds of macrofungi in regions of Russian Far East, published in Rebriev et al., 2023. A total of 77 species of macromycetes are reported for the first time from 7 administrative units of the Russian Far East: Amur Oblast, Jewish Autonomous Oblast, Magadan Oblast, Sakhalin Oblast, Kamchatka Krai, Khabarovsk Krai and Primorskiy Krai. 13 species are reported as the first records for the Russian Far East, and 4 (Calycina subtilis, Cistella fugiens, Lachnum roridum and Lasiobelonium horridulum) are new for Russia. For some of the rare species, notes are given about the main differences in morphology and ecology, about the features of distribution. The identification of Jahnoporus brachiatus is confirmed by molecular genetic data, and this specimen was isolated into pure culture. The material was deposited in ABGI, LE, MAG, SVER, TOB, VLA herbaria as well as in the Yu. Rebriev (YuR) and A. Shiryaev (Shiryaev) personal collections.
Darwin Core Archive of New species of macromycetes for regions of the Russian Far East - 2023
Зимние маршрутные учеты в природном парке «Самаровский Чугас» (Ханты-Мансийский Автономный Округ)
Зимний маршрутный учет используется для определения численности охотничьих видов на особо охраняемых территориях и является одним из основных методов мониторинга состояния популяций животных. Учеты проводятся в зимнее время года, где фиксируются пересечения следов на снегу с маршрутом учетчика. Пересчет числа пересечений следов на площадь идет с использованием коэффициентов активности животных, площади разных экосистем, и дальности наблюдения (для птиц). Первичные полевые данные вносятся в карточку учета, а затем переносятся в базу данных и аналитические инструменты для подсчета численности и ее динамики. Подробнее методика учета описана в (приказ Министерства природных ресурсов РФ от 11.01.2012 г. №1 «Об утверждении методических указаний ...). Зимний маршрутный учет - основной инструмент, позволяющий оценить численность охотничьих зверей и оседлой птицы на территории природного парка "Самаровский Чугас". Учеты проводятся с 2012 года, со времени организации парка. В настоящее время учет проводится по семи маршрутам, проложенным в основных лесных массивах на территории (раньше число и протяженность маршрутов варьировало). Протяженность одного маршрута варьирует от 5 км до 9 км, общая протяженность всех маршрутов составляет около 53,2 км. Учеты проводятся раз в год в январе-феврале. Каждый маршрут проходится несколько раз за учет для получения средних характеристик. Публикация данных зимних маршрутных учетов осуществляется по инициативе Центра мобилизации данных о биоразнообразии Севера Западной Сибири (https://nwsbios.org/oopt-templates/). Исходные данные из карточек маршрутных учетов вносятся в шаблон таблицы иксель, подготовленный с учетом формата данных Darwin Core. Аналитические данные (коэффициэнты активности животных, площади экосистем) в таблицах отсутствуют и приводятся в описании метаданных в разделе Методика.
Darwin Core Archive of Зимние маршрутные учеты в природном парке «Самаровский Чугас» (Ханты-Мансийский Автономный Округ)
Зимние маршрутные учеты в природном парке «Нумто» (Ханты-Мансийский Автономный Округ)
Зимний маршрутный учет используется для определения численности охотничьих видов на особо охраняемых территориях и является одним из основных методов мониторинга состояния популяций животных. Учеты проводятся в зимнее время года, где фиксируются пересечения следов на снегу с маршрутом учетчика. Пересчет числа пересечений следов на площадь идет с использованием коэффициентов активности животных, площади разных экосистем, и дальности наблюдения (для птиц). Первичные полевые данные вносятся в карточку учета, а затем переносятся в базу данных и аналитические инструменты для подсчета численности и ее динамики. Подробнее методика учета описана в (приказ Министерства природных ресурсов РФ от 11.01.2012 г. №1 «Об утверждении методических указаний ...). Зимний маршрутный учет - основной инструмент, позволяющий оценить численность охотничьих зверей и оседлой птицы на территории природного парка "Нумто". Учеты проводятся с Х года. В настоящее время учет проводится на 30 маршрутах. Протяженность одного маршрута варьирует от 9 км до 15 км, общая протяженность всех маршрутов составляет около 420 км. Учеты проводятся раз в год в январе-феврале. Каждый маршрут проходится несколько раз за учет для получения средних характеристик. Публикация данных зимних маршрутных учетов осуществляется по инициативе Центра мобилизации данных о биоразнообразии Севера Западной Сибири (https://nwsbios.org/oopt-templates/). Исходные данные из карточек маршрутных учетов вносятся в шаблон таблицы excel, подготовленный с учетом формата данных Darwin Core. Аналитические данные (коэффициенты активности животных, площади экосистем) в таблицах отсутствуют и приводятся в описании метаданных в разделе Методика.
Darwin Core Archive of Зимние маршрутные учеты в природном парке «Нумто» (Ханты-Мансийский Автономный Округ)
The checklist of vascular plants of the Natural park «Kondinskie lakes»
The dataset includes a list of vascular plant species registered on the territory of the Natural park «Kondinskie lakes» (Russian Federation, Khanty-Mansi Autonomous Okrug) from 1949 to 2019. Various researchers studied the flora. The first checklist of vascular plants for the area was created in 1949 by a researcher of the Malaya Sos'va State nature reserve Eugenia V. Dorogostaiskaya. Other researchers working in the park to reveal flora and add additional species were Aleksandra L. Vasina (participated in inventories in 1992), Tatiana L. Bespalova (working in the park since 1998) and Natalia N. Korotkih (working in the park since 2008). Other botanists from the Yugra region and other regions were visiting the area as well with inventory and monitoring work. The collection is stored in the Herbarium of the Nature Park and currently includes several thousand of specimens as well as in other collections of visiting researchers. Аccording to the data for 2019, the list of flora includes 335 species registered on the territory of the Park.
Darwin Core Archive of The checklist of vascular plants of the Natural park «Kondinskie lakes»
Ectoparasites of Zootoca vivipara (Lichtenstein, 1823) in Khanty-Mansi Autonomous Okrug
Эктопаразиты ящериц были представлены личинками, нимфами и взрослыми особями иксодовых и гамазовых клещей. Было зарегистрировано два вида иксодид: Ixodes persulcatus (личинки) и Ixodes apronophorus (взрослые особи), отмечены исключительно в пойменных биотопах р. Обь. Представители сем. Liponyssidae (Sauronyssus saurarum и Ophyonyssus natricus) чаще встречались вне пойм крупных рек на верховых болотах. Сбор материала проводился с живородящей ящерицы Zootoca vivipara (Lichtenstein, 1823) отловленных в 2007 и 2008 годах с мая по сентябрь. The research was carried out in the following areas: Nizhnevartovsk (natural park "Siberian Uvaly"), Nefteyuganskoye (Verkhne-Salymskoe deposit), Surgutskoe (environs of Lyamina village, environs of Saygatina village) and Beloyarsky (nature reserve "Sorumsky").
Darwin Core Archive of Ectoparasites of Zootoca vivipara (Lichtenstein, 1823) in Khanty-Mansi Autonomous Okrug
Literature occurrence database of global fungal diversity in peatlands
The dataset representing a compilation of species lists from published literature on fungal diversity of peatlands globally. Totally 127 literature sources were found, digitized and information on fungal occurrences was extracted in the dataset. About 20% of the published works used cultivation technique (summing in about 1000 records in the dataset), while 80% represent direct observation of fruiting structures of larger fungi or micro-fungi (totally about 4700 records in the dataset). The table has 15 fields, including scientificName, habitat (vegetation type), occurrenceRemarks (substrate or other field notes), bibliographicCitation, eventDate, country, and locality. The taxonomic structure of fungal diversity represented by the dataset (after synonimization using GBIF species matching tool) includes 3 kingdoms (Fungi, Chromista, Protozoa), 7 phyla, 27 classes, 87 orders, 239 families, 616 genera and about 1500 species. The larger fungi represent about 80% of occurrences and 1100 species, while microfungi only about 400 species.
Darwin Core Archive of Literature occurrence database of global fungal diversity in peatlands
Avifauna of airports and solid waste landfills in Khanty-Mansi Autonomous Okrug, Russia
The dataset present bird counts made for an airport bird control, at the airports of the cities of Khanty-Mansiysk, Nyagan, Beloyarsky and in the immediate vicinity, including the cities of Surgut and Urai of the Khanty-Mansi Autonomous Okrug - Yugra. Prevention of aircraft collisions with birds is a specific problem that appeared with the birth of aviation itself, and occupies an intermediate position between aviation and ornithology. Each airport is unique in terms of a set of environmental and industrial conditions that determine the degree of danger posed by birds to aircraft flights. Bird control in aviation has been established as a separate type of flight safety - ornithological flight safety. Modern ornithology provides a set of measures, including measures for operational and passive protection of aircraft, airfield and airport facilities from birds. Bird control also includes measures for the ecological transformation of the aerodrome and near-aerodrome areas in order to reduce their attractiveness for birds, measures to assess the bird hazard of the airport area. Environmental transformation measures are to eliminate or reduce the environmental factors themselves that attract birds. These include the availability of accessible food and water, convenient nesting sites, places for safe day and night rest, and shelters. Implementation of environmental transformation measures is the optimal solution to the problem of reducing the likelihood of collisions due to the appearance of birds on the territory of the airport, in the air sector of the airport and aircraft approaches. The ecological aspect of the bird hazard potential can be assessed within the framework of an ecological and ornithological surveys of the airport area. A full-scale ecological and ornithological survey provides information on the spatial and temporal distribution of birds in the study area. The survey identifies factors contributing to the attraction and concentration of birds, and determines the possibility of influencing the ornithological situation in order to reduce the risk of collisions with aircraft. The resulting data serves as the information basis for planning all bird control activities at the airport.
Darwin Core Archive of Avifauna of airports and solid waste landfills in Khanty-Mansi Autonomous Okrug, Russia
Arachnids of the mole burrows in the forest zone of Western Siberia
The distribution of gastropoda in mole burrows in the forest zone of Western Siberia was studied for the first time. The results obtained significantly expand our understanding of the ecology of the common mole (Talpa europaea) and fauna living in its burrows on the eastern border of its range.
Darwin Core Archive of Arachnids of the mole burrows in the forest zone of Western Siberia
Amphibians and Reptiles census in the Western Siberia (2010-2020 years of research)
The census of amphibians and reptiles was carried out using standart protocols (using plots and traps), following Dinesman, Kaletskaya, 1952; Shlyakhtin, Golikova, 1986; Darevsky, 1987, and others. The sites were located in defferent natural vegetation types of the middle taiga zone. All biotopes are characterized according to the standard scheme of geobotanical description. In terrestrial biotopes, animals were caught in cones. In forest biocenoses, grooves were dug, 50 m high and wide (Dinesman and Kaletskaya, 1952). In waterlogged biotopes (all types of swamps, coastal areas of lakes and rivers), fences were made from plastic film (Okhotina, Kostenko, 1974), 30-40 cm high and 50 m long. The census included the species composition, the abundance, physical activity and a number of other characteristics. Depending on the specific task of the study, the in vivo method of studying lizards and snakes was used (Hagstrom, 1973, cited in: Lada, Sokolov, 1999; Zamaletdinov, Khairutdinov, 2006), or we used the modified bags for transporting lizards (Eplanova, 2003), or fixation in 4 % formalin solution (Manual ..., 1989).
Darwin Core Archive of Amphibians and Reptiles census in the Western Siberia (2010-2020 years of research)
Зимние маршрутные учеты в заказнике «Березовский» (Ханты-Мансийский Автономный Округ)
Зимний маршрутный учет используется для определения численности охотничьих видов на особо охраняемых территориях и является одним из основных методов мониторинга состояния популяций животных. Учеты проводятся в зимнее время года, где фиксируются пересечения следов на снегу с маршрутом учетчика. Пересчет числа пересечений следов на площадь идет с использованием коэффициентов активности животных, площади разных экосистем, и дальности наблюдения (для птиц). Первичные полевые данные вносятся в карточку учета, а затем переносятся в базу данных и аналитические инструменты для подсчета численности и ее динамики. Подробнее методика учета описана в (Методические рекомендации ...). Зимний маршрутный учет - основной инструмент, позволяющий оценить численность охотничьих зверей и оседлой птицы на территории Березовского заказника. Учеты проводятся с Х года. В настоящее время учет проводится на 18ти маршрутах. Протяженность одного маршрута варьирует от 7 км до 11 км, общая протяженность всех маршрутов составляет около Х км. Учеты проводятся раз в год в январе-феврале. Каждый маршрут проходится несколько раз за учет для получения средних характеристик. Публикация данных зимних маршрутных учетов осуществляется по инициативе Центра мобилизации данных о биоразнообразии Севера Западной Сибири (https://nwsbios.org/oopt-templates/). Исходные данные из карточек маршрутных учетов вносятся в шаблон таблицы иксель, подготовленный с учетом формата данных Darwin Core. Аналитические данные (коэффициэнты активности животных, площади экосистем) в таблицах отсутствуют и приводятся в описании метаданных в разделе Методика.
Darwin Core Archive of Зимние маршрутные учеты в заказнике «Березовский» (Ханты-Мансийский Автономный Округ)
Lake Yantyk is part of the lakes of the Tarman wetland complex. Bog complexes are environment-forming landscapes that perform accumulating, water-regulating functions, play the role of biofilters and landscape-geochemical barriers for chemical and biological pollutants. The Tarmansky wetland complex, located near the city of Tyumen, belongs to the subtaiga subzone, the area of ​​the Tarmansky swamp is 1240 km2. Hydrobiological studies were carried out on Lake Yantyk with an area of ​​5.8 km2. The lake is shallow, the prevailing depths are 1.2-1.5 m. Bottom sediments are represented by silty sand. In samples of zoobenthos and zooperiphyton, 43 species of aquatic organisms were found.
Darwin Core Archive of Regional fauna inventory of lake Yantyk
Elena Zvyagina's personal collection of fungi collected as a result of field research in various regions of Russia. At the moment, the dataset is loaded mainly with specimens collected in North Karelia, Western Siberia, and the Russian Far East. The collection dataset also includes parts of specimens loaned by various herbaria and personal collections in the course of work on Boletaceae, even if these specimens were returned to the herbarium. The classical method of collection and preservation of dry specimens of macrofungi is used to store the material. A large part of collection has been sequenced and has attached sequence material. The collection is stored at the White Sea Biological Station of Moscow State University (186672, Russia, Republic of Karelia, poselok Primorsky).
Darwin Core Archive of The Fungarium of Elena Zvyagina
The checklist of macrofungi of raised bogs: barcoding of accumulated collection following the 9-year plot-based monitoring in Northwestern Siberia
The project aimes to describe the diversity and community structure and dynamics of larger fungi of peatlands in Northwestern Siberia, Russia by direct observation and complement it with molecular approach (barcoding of ITS region of revealed species diversity). In contrast to previous research, we used permanent plots with regular visits all over the vegetation season and continued the monitoring for nine years, which is to our knowledge the longest observation series of the community of larger fungi made in peatlands. The resulted data with counts of fruitbodies was published in a different dataset (https://doi.org/10.15468/e9g5ri). The accumulated collection of dried specimens of larger fungi resulted during the monitoring totals about 500 specimens. These specimens were revised in terms of collection and photographs quality, and a selected about 200 specimens were used for bacroding (ITS, rarely LSU and TEF). The resulted sequences were analysed using manual BLAST search and UNITE/PlutoF Species Hypothesis matching. The aim of this dataset is to preserve the sequence data in relation to studied specimens in a structured way (https://docs.gbif.org/publishing-dna-derived-data/1.0/en/). The dataset contains two related table: 1) occurrence table describes the specimens, including photographs of the specimens (totally 149 specimens); 2) dna extention table describes related sequences (totally 155 sequences). The paper with the description and analyses of these data is to be published.
Darwin Core Archive of The checklist of macrofungi of raised bogs: barcoding of accumulated collection following the 9-year plot-based monitoring in Northwestern Siberia
eDNA-based occurrence dataset on fungi of fine woody debris studied in Northwestern Siberia
To study the total DNA of the dead wood community, we used an approach of standardised substrates (Shumskaya et al. 2023) developed to describe the community in the early stages of wood decay. Sterilised wooden dowels of three tree species (pine, larch and birch) were buried among forest litter in peatland and forest habitats and were extracted at two-week intervals throughout two years. The collected dowels were wrapped in sterile bags and dried at 40°C for a day. A total of 189 wood dowels were extracted by the end of the second season. The same number of samples of environmental DNA, extracted from the wood, were obtained and stored at −20°C until being processed. Metabarcoding of the ITS2 region (Illumina MiSeq platform) revealed about 1600 SHs and 750 Linnean species. The obtained sequences were processed using QIIME2 (Quantitative Insights Into Microbial Ecology 2, version 2023.9). The dataset represent an occurrence dataset with the DNA-derived extension table based on guidelines (Abarenkov et al. 2023). The first table (Occurrence Core) has 20 fields to describe features of samples and observed taxonomic occurrences with their abundances (number of reads). The related DNA-derived data table contains sequences linked to each occurrence with their metadata.
Darwin Core Archive of eDNA-based occurrence dataset on fungi of fine woody debris studied in Northwestern Siberia
Sphagnum annual growth and primary production measurements (Mukhrino field station, West Siberia) (2018-2024)
Measurements of annual growth of Sphagnum spp. were started in Mukhrino field station (West Siberia) in 2018 as part of the complex program on carbon dynamics in raised bog ecosystems. The main goal of this project is to estimate general characteristics of growth/primary production of different species of Sphagnum in Mukhrino bog. Totally 57 plots were located along the wooden boardwalks of the field research polygon. Measurements were carried out using modified crancked wire approach (brush-wire) (S. fuscum, S.magellanicum, S.angustifolium, S.papillosum, S.capillifolium) or individual wire ringlets (S. majus, S.jensenii, S.balticum). Part of the plots were under warming experiment conditions (Open Top Chambers). Totally 3226 measurements were made during 2018-2024 growth seasons, including: 1) growth increment of sphagnum shoots, 2) number of capitulas per dm^2, 3) weight of 3cm length shoots per dm^2, and 4) weight of capitulas per dm^2. The project is launched in collaboration with the Institute of Soil Science and Agrochemistry, Novosibirsk.
Darwin Core Archive of Sphagnum annual growth and primary production measurements (Mukhrino field station, West Siberia) (2018-2024)
The Lichen collection of Yugra State University (YSU-L)
The Fungarium of Yugra State University is a systematic reference collection of fungi organized as a part of the Yugra State University Biological Collection (YSU BC). The main purpose of the Fungarium is to initiate and facilitate systematic studies of fungi in the region. It also serves for education and can be used by specialists in different applied disciplines. Lichens are allocated in a separate section with the acronym YSU-L. The lichen collection includes several thousand dry samples collected in the Northwestern Siberia.
Darwin Core Archive of The Lichen collection of Yugra State University (YSU-L)
Herbarium of Natural park «Kondinskie lakes»
The dataset includes a database of vascular plant collection (Herbarium) collected on the territory of the Natural park «Kondinskie lakes» (Russian Federation, Khanty-Mansi Autonomous Okrug) and adjacent areas from 1949 to 2025. Various researchers studied the flora. The first checklist of vascular plants for the area was created in 1949 by a researcher of the Malaya Sos’va State nature reserve Eugenia V. Dorogostaiskaya. Other researchers working in the park to reveal flora and add additional species were Aleksandra L. Vasina (participated in inventories in 1992), Tatiana L. Bespalova (working in the park since 1998) and Natalia N. Korotkih (working in the park since 2008). Other botanists from the Yugra region and other regions were visiting the area as well with inventory and monitoring work. The collection is stored in the Herbarium of the Nature Park and currently includes several thousand of specimens as well as in other collections of visiting researchers. Аccording to the data for 2025, the list of flora includes about 350 species registered on the territory of the Park.
Darwin Core Archive of Herbarium of Natural park «Kondinskie lakes»
Field workshop on data publishing in Ethnographic and ecological park "Yugra" (Megion, 1-3 July 2019). Biodiversity assessement.
The field workshop on data publishing was organized in the Ecological park "Yugra" as part of the student field practice of Nizhnevartovsk State University. The course program included theoretical part on biodiversity open data publishing and citizen science initiatives in biodiversity. The practical course included field trips for biodiversity inventory and evening sessions on data publishing in GBIF and iNaturalist platform. The field workshop was attended by 59 people (students and teachers) from 4 cities of the Khanty-Mansi Autonomous Okrug - Yugra. The dataset presents species records of vascular plants, fungi and animals collected during the inventories.
Darwin Core Archive of Field workshop on data publishing in Ethnographic and ecological park "Yugra" (Megion, 1-3 July 2019). Biodiversity assessement.
Toward the fauna of freshwater bivalve mollusks of the Malyi Yugan River basin (Russia, Western Siberia)
The data on the fauna and distribution of Bivalvia in the Malyi Yugan River basin (Western Siberia, Tyumen Region) are given. The aquatic malacofauna of this territory has not been studied previously. In 2013-2014, the Malyi Yugan River as well as seven its tributaries, two connected water bodies, seven floodplain lakes and a single moraine lake have been sampled. As a results, a list of 18 species of bivalves belonging to 6 genera of families Sphaeriidae and Unionidae, as well as data of mollusks distribution are provided.
Darwin Core Archive of Toward the fauna of freshwater bivalve mollusks of the Malyi Yugan River basin (Russia, Western Siberia)
Ants of mole burrows in the forest zone of Western Siberia
The occurrences of ants in mole burrows in the forest zone of Western Siberia was studied for the first time. The results obtained significantly expand our understanding of the ecology of the common mole (Talpa europaea) and fauna living in its burrows on the eastern border of its range.
Darwin Core Archive of Ants of mole burrows in the forest zone of Western Siberia
The herbarium collection of vascular plants represents about 1000 specimens collected mainly in Yugra region during expedition work of Elena Lapshina, Emelyan Muldiyarov, Ilya Filippov and others. The digitization of this collection (including preparation of herbarium sheets) started in Dec 2020 and will be accomplished during 2021.
Darwin Core Archive of Herbarium of Yugra State University
Route-based survey of terrestrial macrofungi nearby Khanty-Mansiysk, Western Siberia
The dataset summarizes route-based counts of larger fungi as part of a long-term monitoring program for macrofungi in different forest types in central part of Western Siberia (nearby Khanty-Mansiysk). The program was initiated to describe the quantitative and qualitative structure and spatial variation of the community of macromycetes and to show its dynamics seasonally and inter-annually. Ten plots were located in different forest types and visited regularly during vegetation seasons 2015-2020. The results of plot-based counts were published in a separate dataset (https://doi.org/10.15468/ge1hkl). Plot-based observations were supplemented by route-based surveys to reveal rare species and enlarge observation area. Totally five routes each about 1 km long were located in proximity of plots in major vegetation types and visited regularly through vegetation season. The resulting dataset represents the data of about 100 route-based surveys, made over the vegetation seasons 2015-2020, corresponding to 2700 occurrences with counts of fruit bodies of the observed species.
Darwin Core Archive of Route-based survey of terrestrial macrofungi nearby Khanty-Mansiysk, Western Siberia
Crowdsourcing fungal biodiversity: revision of inaturalist observations in Northwestern Siberia
The dataset presents a snapshot of crowdsourcing data collected on iNaturalist.org and identified by a group of professional mycologists during a revision of crowdsourcing data project (https://sibmyco.org/collections/inaturalist-revision/). The resulted data were exported from iNaturalist.org, analysed and described in a related publication (Filippova et al., 2022). A regional mycological club was established in 2018, encouraging its members to contribute observations of fungi to iNaturalist.org (https://www.inaturalist.org/projects/fungi-and-myxomycetes-in-northern-west-siberia). A total of about 15K observations of fungi and myxomycetes were uploaded so far, by about 200 observers, from three administrative regions (Yamalo-Nenets Autonomous Okrug, Khanty-Mansi Autonomous Okrug and Tyumen Region). The goal of the work presented in this study consisted in a collaborative effort of professional mycologists who were invited to help with the identification of these observations and analyze the accumulated data. As the result, all observations were reviewed by at least one expert. About a half of all observations have been identified reliably to the species level and received Research Grade status. Of those, 197 records of 92 species represented finds of taxa new to their respective regions; such finds are listed in the Attachment with brief commentaries; 876 records of 53 species of different protection status provide important data for conservation programs. The remaining half of the observations consists of records that remained under-identified for various reasons: poor quality photographs, complex taxa (impossible to identify without microscopic or molecular study), or lack of experts in a particular taxonomic group. Despite that the half of presented records already published through GBIF in "iNaturalist Research-grade Observations" dataset (https://doi.org/10.15468/ab3s5x), we decided to publish a dataset which includes all observations updated by the date of paper publishing and preserved at this state for archiving purposes. The dataset is made with the assumed pros and contras in mind: Pros: 1) We want to preserve the results of revision work with iNaturalist-based observations in a stable archive. On the contraty, the observations data published on iNaturalist.org are always revised and updated; 2) We aim to publish raw (source) data for the revision paper analyses in a single FAIR archive; 3) We want all records published on iNaturalist.org to be used in further study of fungi in the region and globally, including "Needs ID" status observations; provided that these records were reviewed by professional mycologists and received at least two expert opinions; 4) The resulting dataset was augmented with several fields to add information about regional novelties and identification remarks. Contras: 1) Duplication of records in two dataset (iNaturalist and ours), which nevertheless could be solved by GBIF duplicates search algorithm.
Darwin Core Archive of Crowdsourcing fungal biodiversity: revision of inaturalist observations in Northwestern Siberia
New Larix-associated Suillus species (Boletales, Agaricomycetes) from North Asia
The dataset share information for 13 specimens examined during the description of the new Suillus species from North Asia.The specimens of the Suillus bresadolae f. flavogriseus (Cazzoli & Consiglio) Klofac, Suillus nueschii var. caerulescens Singer, Suillus gastroflavus Zvyagina, Rebriev, Sazanova & E.F. Malysheva and new species are annotated. Annotations are accompanied by geographic data, images of original labels, fruiting bodies, exsicсates and microstructures.
Darwin Core Archive of New Larix-associated Suillus species (Boletales, Agaricomycetes) from North Asia
Genus Glycyrrhiza at the CSBG SB RAS Digital herbarium (NS, NSK collections)
Glycyrrhiza Tourn. ex L. is a genus of about 20 accepted species in the legume family (Fabaceae), with a subcosmopolitan distribution in Asia, Australia, Europe, and the Americas. The genus is best known for liquorice (British English; licorice in American English), G. glabra, a species native to Eurasia and North Africa, from which most confectionery liquorice is produced. All 308 specimens from the genus Glycyrrhiza stored in NS and NSK herbarium collections were digitized and placed in CSBG SB RAS Digital herbarium (http://herb.csbg.nsc.ru:8081). For each specimen, the species name, locality, collection date, collector, ecology and revision label are recorded in this dataset.
Darwin Core Archive of Genus Glycyrrhiza at the CSBG SB RAS Digital herbarium (NS, NSK collections)
Darwin Core Archive of Учет водоплавающих
Cortinarius barcoding database of Western Siberia and adjacent areas
The dataset presents a comprehensive DNA barcode sequence collection for the fungal genus Cortinarius (webcaps) from Western Siberia and adjacent regions of Russia. It includes specimen occurrences paired with curated, quality-controlled ITS nucleotide sequences. Cortinarius is a hyperdiverse genus of ectomycorrhizal fungi crucial for boreal and temperate forest ecosystems. This study addresses the significant gap in molecular data for this region, providing a foundational resource for research in fungal taxonomy, phylogenetics, biogeography, and ecology. The dataset integrates collection metadata (geography, habitat, collectors), molecular data (raw and processed sequences), and morphological data (photographs, descriptions). Specimens are deposited in the Biological Collection of Yugra State University (YSU). The database includes 624 sequenced specimens, representing 213 species, with many sequences (106 specimens) showing high affinity to type specimens and others flagged as potentially novel taxa for further study.
Darwin Core Archive of Cortinarius barcoding database of Western Siberia and adjacent areas
Vegetation releves of rich fens of Malaya Sosva Nature Reserve
The dataset includes 71 vegetation relevés made during a geobotanical survey of rich fens in the southern part of the nature reserve "Malaya Sosva". On the basis of the ecological-floral approach of the J. Brown-Blanke school, 8 associations, 6 subassociations and 3 communities from 5 unions, 3 orders and 3 classes of vegetation were allocated in the vegetation cover of these rich fens. The analysis of vegetation and species composition provided in the related publication (Lapshina et al., 2018).
Darwin Core Archive of Vegetation releves of rich fens of Malaya Sosva Nature Reserve
Genus Corydalis DC. at the CSBG SB RAS Digital herbarium (NS, NSK collections)
The Central Siberian Botanical Garden of the Siberian Branch of the Russian Academy of Sciences (CSBG SB RAS) is the largest botanical institution in the Asian part of Russia. Founded in 1946, the CSBG SB RAS is historically a consortium of two herbarium collections with their own acronyms (NS and NSK) and registration in the Index Herbariorum. Collections count about 700 000 herbarium specimens of vascular plants gathered in Siberia, Russian Far East, Europe, Asia and America. Corydalis (from Greek korydalís "crested lark") is a genus of about 540 species of annual and perennial herbaceous plants. Some taxonomists classify the genus as a family Papaveraceae Juss. (Zhang, Su, Liden, 2008) and others as Fumariaceae Marquis. (Mikhailova, 2012, 2017, 2020, 2021). Corydalis species are the only dicots having only a single cotyledon (seed leaf). Corydalis native to the temperate Northern Hemisphere and the high mountains of tropical eastern Africa. They are most diverse in China and the Himalayas, with at least 357 species in China, 34 species recorded for Asian Russia (Doronkin, 2012). All 1022 specimens from the genus Corydalis DC. (Papaveraceae Juss.) stored in NS and NSK herbarium collections were digitized and placed in CSBG SB RAS Digital herbarium (http://herb.csbg.nsc.ru:8081). For each specimen the species name, locality and geolocation, collection date, collector, ecology and revision label are recorded.
Darwin Core Archive of Genus Corydalis DC. at the CSBG SB RAS Digital herbarium (NS, NSK collections)
The Bovista species diversity in Russia, based on the data of official herbaria (LE, VLA, KEM, MAG, NSK, K, PRM) and the author`s personal mycological collection (YuR)
The diversity of Bovista Pers. (Lycoperdaceae, Basidiomycota) species in Russia is presented. The specimens examined were obtained from official mycological herbaria (LE, VLA, KEM, MAG, NSK, PRM), the author`s personal mycological collection (YuR) and some specimens are duplicated in K. In total, 474 specimens of 16 species are presented. There are: Bovista acuminata (Bosc) Kreisel, B. aestivalis (Bonord.) Demoulin, B. altaica Rebriev & I.A.Gorbunova, B. cretacea T.C.E.Fr., B. disciseda Rebriev & I.A.Gorbunova, B. furfuracea Pers., B. graveolens Schwalb, B. helenae Rebriev, B. hollosii Jeppson, Finy & E.Larss., B. limosa Rostr., B. nigrescens Pers., B. paludosa Lév., B. plumbea Pers., B. pusilla (Batsch) Pers. sensu Larsson et al., B. subcatastoma Rebriev & I.A.Gorbunova, B. tomentosa (Vittad.) De Toni. Among these, the recently described species, Bovista altaica, B. disciseda, B. helenae and B. subcatastoma, are only known from Russia (Rebriev & Dvadnenko 2016; Rebriev et al. 2017). Furthermore, some of these species are very rare and only known from a few localities (e.g. Bovista cretacea, B. limosa and B. pusilla ss. Larsson et al.). More extensive results published in Rebriev et al., 2020.
Darwin Core Archive of The Bovista species diversity in Russia, based on the data of official herbaria (LE, VLA, KEM, MAG, NSK, K, PRM) and the author`s personal mycological collection (YuR)
Endoparasites of amphibians of the city of Surgut
The diversity of helminth parasites of amphibia was studied by opening the lungs and gastrointestinal tract, washing the organs in distilled water. Trematodes were fixed in 4% formalin solution, nematodes - in 70% ethyl alcohol. Determination of helminths was carried out according to K.M. Ryzhikov et al. (1980). Infection of animals was assessed by three indicators: the degree of invasion (EI) - the percentage of infected individuals from all examined; invasion intensity (II) - the number of parasites per infected individual; parasite abundance index (IO) - the number of parasites on average per one individual of the host (Gashev, 2005). In the lungs and intestines of the amphibia in the Surgut city, five species of helminths belonging to two systematic groups were found. Trematode class: Dolichsaccus rastellus (Olsson, 1876), Haplometra cylindracea (Zeder, 1800). Nematode class: Rhabdias bufonis (Schrank, 1788), Oswaldocruzia filiformis (Goeze, 1782), Cosmocerca ornata (Dujardin, 1845). The most commonly met are two species of nematodes: intestinal Oswaldocruzia filiformis and pulmonary Rhabdias bufonis. Infected individuals are listed according to observation made during the census of amphibia, data provided in a dataset (Nakonechnyi at all, 2021). The degree of infestation of Rana arvalis by helminths in the city did not exceed 50%; this may be a consequence of changes in the trophic relationships of frogs, as well as disruption of the life cycles of parasites. However, in some biotopes, the degree of invasion may exceed 80%. The intensity of invasion by city zones varied from 1 to 41 specimens of parasites per 1 host. There were significant differences in the infection of frogs by trematodes in floodplains and at the mainland habitats. The maximum species composition of helminths (5 species) is presented in mixed forests and floodplains (Nakonechny et all, 2021). Сбор гельминтов проводили при вскрытии лёгких и желудочно-кишечного тракта, промывая органы в дистиллированной воде. Трематод фиксировали в 4%-м растворе формалина, нематод в 70%-м этиловом спирте. Определение гельминтов проведено по К.М. Рыжикову с соавторами (1980). Заражённость животных оценивали по трём показателям: экстенсивность инвазии (ЭИ) – процент заражённых особей от всех обследованных; интенсивность инвазии (ИИ) – количество паразитов на одну заражённую особь; индекс обилия паразитов (ИО) – количество паразитов в среднем на одну особь хозяина (Гашев, 2005). В легких и кишечнике остромордой лягушки г. Сургута выявлено пять видов гельминтов, относящихся к двум систематическим группам. Класс Trematoda: Dolichsaccus rastellus (Olsson, 1876), Haplometra cylindracea (Zeder, 1800). Класс Nematoda: Rhabdias bufonis (Schrank, 1788), Oswaldocruzia filiformis (Goeze, 1782), Cosmocerca ornata (Dujardin, 1845). Ядро составляют два вида нематод: кишечная O. filiformis и лёгочная Rh. bufonis. Зараженные особи указаны согласно приведенным спискам встреч из наборов данных GBIF (Nakonechnyi at all, 2021). Экстенсивность инвазии гельминтами остромордой лягушки по зонам города не превышала 50 %, это может быть следствием изменения трофических связей лягушек, а также нарушением жизненных циклов паразитов. Однако в некоторых биотопах экстенсивность инвазии могла превышать 80 %. Интенсивность инвазии по зонам колеблется от 1 до 41 экземпляра паразита на 1 особь хозяина. Выявлены достоверные различия в заражённости трематодами между лягушками пойменных местообитаний и коренного берега. Максимальный видовой состав гельминтов (все 5 видов) представлен в смешанных лесах и на пойменных лугах (Nakonechnyi at all, 2021).
Darwin Core Archive of Endoparasites of amphibians of the city of Surgut
Species Composition of the Zooperiphyton of the Beshkilka River (Tyumen region)
The dataset describes the species composition of the zooperephyton of the Beshkilka river. The river flows in the Isetsky district of the Tyumen region. In this study area, 34 taxon were identified. Of these, 23 were identified to the species level; 4 to genus; 4 to family; 2 to class; 1 to phylum. The research was funded by RFBR and Tyumen Region, project number 20-44-720008
Darwin Core Archive of Species Composition of the Zooperiphyton of the Beshkilka River (Tyumen region)
Invertebrates of mole burrows in the forest zone of Western Siberia
The occurrences of invertebrates in mole burrows in the forest zone of Western Siberia was studied for the first time. The results obtained significantly expand our understanding of the ecology of the common mole (Talpa europaea) and fauna living in its burrows on the eastern border of its range.
Darwin Core Archive of Invertebrates of mole burrows in the forest zone of Western Siberia
Earthworms of mole burrows in the forest zone of Western Siberia
The distribution of earthworms in mole burrows in the forest zone of Western Siberia was studied for the first time. The results obtained significantly expand our understanding of the ecology of the common mole (Talpa europaea) and fauna living in its burrows on the eastern border of its range.
Darwin Core Archive of Earthworms of mole burrows in the forest zone of Western Siberia
Amphibians and Reptiles census in the Western Siberia (2002 - 2009 years of research)
Darwin Core Archive of Amphibians and Reptiles census in the Western Siberia (2002 - 2009 years of research)
The fungarium of "Kondinskie Lakes" Natural Park
Fungarium of Kondinskie Lakes Natural Park accumulated during the research in the area by a researcher Elena A. Butunina. The collection is stored as dry specimens. The database of the collection managed in Specify software (http://bioportal.ugrasu.ru/). Totally the fungarium stores about 500 specimens of larger fungi.
Darwin Core Archive of The fungarium of "Kondinskie Lakes" Natural Park
Darwin Core Archive of Учет боровой птицы на токах
The checklist of bryoflora of the Natural park «Kondinskie lakes»
The dataset includes a list of bryoflora species registered on the territory of the Natural park «Kondinskie lakes» (Russian Federation, Khanty-Mansi Autonomous Okrug) from 1949 to 2019. Various botanists collected the collection of bryoflora of the park area. The collections of the period from 2001 to 2003 were identified by A.P. Dyachenko, from 2006 to 2007 by E.Ya. Muldiyarov, from 2008 to 2017 by E.D. Lapshina, from 2018 by N.N. Korotkih. Аccording to the data for 2019, the list of mosses includes 114 species registered on the territory of the Park. The collections of periods 2001-2003 and 2008-2018 stored in the herbarium collection of the park. Other collections are stored in the Biological collection of Yugra State University (YSU) and curated by Elena Lapshina.
Darwin Core Archive of The checklist of bryoflora of the Natural park «Kondinskie lakes»
Darwin Core Archive of Учет орлана-белохвоста
Decomposition dynamics of native and standard substrates in forests and peatlands: Mukhrino field station, Western Siberia (2016-2023)
To estimate the values and parameters of decomposition in major ecosystem types in Mukhrino field station, a series of experiments had been initiated since 2016. Occasional studies on decomposition of peat and Sphagnum spp. were performed earlier by the Institute of Soil Science and Agrochemistry (Novosibirsk) (Kosykh et al., 2017a; 2017b). The classical approach of litter bags was used to estimate weight lost, including standard litter type (tea) and native litters in natural as well as in experimental warming conditions (temperature raise by Open Top Chambers). The standard tea substrate was used to compare habitat effect and as part of the global projects on decomposition dynamics, where two different tea types are used to estimate decomposition constant from only one extraction point (Keuskamp et al., 2013; Djukic et al., 2018; MacDonald et al., 2018). To estimate the natural values of decomposition, eleven types of native substrates were chosen. The measurements were filled in the table formatted by Darwin Core standard for biological diversity data and available openly in GBIF (the dataset is updated after each new year of measurements).
Darwin Core Archive of Decomposition dynamics of native and standard substrates in forests and peatlands: Mukhrino field station, Western Siberia (2016-2023)
The Fungarium of Yugra State University is a systematic reference collection of fungi organized as a part of the Yugra State University Biological Collection (YSU BC). The main purpose of the Fungarium is to initiate and facilitate systematic studies of fungi in the region. It also serves for education and can be used by specialists in different applied disciplines. The taxonomical structure of the collections currently includes the total number of species represented – about 1.5K, genera represented – about 500, families represented – about 150. The majority of the specimens in the YSU Fungarium belong to the Basidiomycota (about 80%), less to Ascomycota (10%) with few specimens of Zygomycota and Myxomycota. The majority of specimens were collected in Khanty-Mansi Autonomous Okrug (90%), with 11 other regions of Russia represented by small numbers. The collection is gradually growing and is open to prospective users in systematics, ecology and geography as well as applied disciplines of mycology.
Darwin Core Archive of The Fungarium of Yugra State University
The checklist of vasculare plants of the Natural Park "Noomto"
The checklist includes a list of vascular plant species registered on the territory of the Natural Park "Noomto" (Russia, Khanty-Mansi Autonomous okrug, Beloyarskiy district). The first information on the flora of this territory is available in the publication "Flora of Western Siberia" (Krylov, 1927-1964). The checklist includes data on floristic studies on the territory of the Natural Park "Noomto" from 1997 to 2019, conducted by Institute of the problems of Northern development of Tyumen Scientific Centre (Valeriy Glazunov, Svetlana Nikolaenko), Ugra State University (Ilya Filippov, Elena Lapshina), Surgut State University (Valeriy Tyurin), Moscow State University (Ekaterina Shishkonakova, Tatyana Tolpysheva, Nikolay Avetov). For 2019, the flora of the Natural Park "Noomto" has 262 species of vascular plants, including native and introduced species.
Darwin Core Archive of The checklist of vasculare plants of the Natural Park "Noomto"
New species of macromycetes for regions of the Russian Far East - 2026
A total, 57 records of 45 species of macromycetes are reported as new for administrative units of the Russian Far East and the whole region. 13 species belong to the Ascomycota (Leotiales, Helotiales, and Pezizales), and 31 – to the Basidiomycota (Agaricales, Boletales, Cantharellales, Gomphales, Hymenochaetales, Platygloeales, Polyporales and Russulales). Four species (Adelphella babingtonii, Helvella solitaria, Pseudoplectania episphagnum, Rutstroemia alnobetulae) are reported for the first time for the Russian Far East. Three species (Rhizopogon jiyaozi, Spooneromyces daliensis and Tympanis prunicola) are new for Russian Federation.
Darwin Core Archive of New species of macromycetes for regions of the Russian Far East - 2026
Collection and observation of macrofungi from Vakh river basin (Western Siberia)
The dataset includes 115 occurrences of macrofungi made during a survey of forested habitats down the Wakh River starting from the Bolshoi Laryak village. Random forays were undertaken in august of 2011 at 6 locations. In total, 87 species of fungi, 52 genera, 29 families, 8 orders, 5 classes were noted: ascomycetes - 2 species, basidiomycetes - 85 species. Distribution of families by the number of species: Hymenogastraceae - 13, Tricholomataceae – 9, Agaricaceae – 7, Strophariaceae – 7, Boletaceae – 7, Cortinariaceae – 7, Hydnangiaceae – 7, Mycenaceae – 6, Russulaceae – 6, Suillaceae – 6, Hygrophoraceae – 5, Inocybaceae – 5, Amanitaceae – 4, Psathyrellaceae – 4, Entolomataceae – 2, Marasmiaceae – 2, Omphalotaceae – 2, Physalacriaceae – 2, Pleurotaceae – 2, Auriscalpiaceae – 1, Cudoniaceae – 1, Dacrymycetaceae – 1, Gomphidiaceae – 1, Hericiaceae – 1, Hygrophoropsidaceae – 1, Paxillaceae – 1, Polyporaceae – 1, Pyronemataceae – 1, Tremellaceae - 1.
Darwin Core Archive of Collection and observation of macrofungi from Vakh river basin (Western Siberia)
Institute for Biological Problems of Cryolithozone SB RAS
Federal Research Centre The Southern Scientific Centre of The Russian Academy of Sciences
Yugra State University Biological Collection (YSU BC)
Tobolsk complex scientific station of Ural Branch of the Russian Academy of Sciences
Regional historical, cultural and ecological center
Central Siberian Botanical Garden SB RAS
National Research Tomsk State University
Natural park «Kondinskie lakes» named after L.F. Stashkevich
Institute of the problems of Northern development is a subdivision of Tyumen Scientific Centre SB RAS
United Directorate of Protected Natural Areas of Yugra region